View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21214_low_3 (Length: 313)
Name: NF21214_low_3
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21214_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 13447497 - 13447784
Alignment:
| Q |
10 |
gcacagattgtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcgg |
109 |
Q |
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| T |
13447497 |
gcacagattgtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcgg |
13447596 |
T |
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| Q |
110 |
tcnnnnnnnnnnnnnnnngacaggatcccacaaaatctagagatttaaagtacagaaaccagctttacaggattcttccatttcattcgactgtaaacaa |
209 |
Q |
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| T |
13447597 |
tcaaaagaaaaagaaacagacaggatcccacaaaatctagagatttaaagtacaggaaccagctttacaggattcttccatttcattcgactgtaaacaa |
13447696 |
T |
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| Q |
210 |
cagcaatgtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttag |
297 |
Q |
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| T |
13447697 |
cggcaatgtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttag |
13447784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 13454185 - 13454227
Alignment:
| Q |
256 |
ttgaaaaatt-aaaataaatgcaaaaacacattaagaagttag |
297 |
Q |
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| T |
13454185 |
ttgaaaaattgaaaataaatgcgaaaacacattaagaagttag |
13454227 |
T |
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