View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21214_low_7 (Length: 266)

Name: NF21214_low_7
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21214_low_7
NF21214_low_7
[»] chr3 (14 HSPs)
chr3 (16-259)||(24113921-24114164)
chr3 (54-242)||(24106928-24107116)
chr3 (77-241)||(24616660-24616824)
chr3 (20-74)||(23693729-23693783)
chr3 (20-74)||(23712169-23712223)
chr3 (20-74)||(23730625-23730679)
chr3 (20-74)||(23749080-23749134)
chr3 (41-97)||(24101976-24102032)
chr3 (126-197)||(23693653-23693725)
chr3 (126-197)||(23712093-23712165)
chr3 (126-197)||(23730549-23730621)
chr3 (126-197)||(23749004-23749076)
chr3 (76-162)||(23690206-23690296)
chr3 (76-162)||(24062443-24062533)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 24113921 - 24114164
Alignment:
Q  16 gctaatactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatccagatatacttcctctggatgagaatcaagtcataacaacg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  24113921 gctaatactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatccagatatacttcctctggatgagaatcaggccgtaacaacg 24114020  T
Q  116 taatcctacgaaaacataactgcattaatattaacaaatcccgcaaaatataggcggaagaattaaagtaatttaataaagatgctcacataactgcatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24114021 taatcctacgaaaacataactgcattaatattaacaaatcccgcaaaatataggcggaagaattaaagtaatttaataaagatgctgacataactgcatt 24114120  T
Q  216 aactttaatgccttctaaatgaaggagaatgcacaagatctctg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24114121 aactttaatgccttctaaatgaaggagaatgcacaagatctctg 24114164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 24106928 - 24107116
Alignment:
Q  54 aattcaatggagaaactaatccagatatacttcctctggatgagaatcaagtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaa 153  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  24106928 aattcagtggagaaactaatcctgatatacttcctctggatgagaatcaggtcataacaacgtaatccaacaaaaacataactgcattaatattaacaaa 24107027  T
Q  154 tcccgcaaaatataggcggaagaattaaagtaatttaataaagatgctcacataactgcattaactttaatgccttctaaatgaaggag 242  Q
    ||||||||||| ||| |||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  24107028 tcccgcaaaatttagacggaagaattaaagtactttcataaagatgctgacataactgcattaacattaatgtcttctaaatgaaggag 24107116  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 24616824 - 24616660
Alignment:
Q  77 gatatacttcctctggatgagaatcaagtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaatcccgcaaaatataggcggaaga 176  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||     
T  24616824 gatatacttcctatggatgagaatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaaatttagacggaagt 24616725  T
Q  177 attaaagtaatttaataaagatgctcacataactgcattaactttaatgccttctaaatgaagga 241  Q
    |||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||||    
T  24616724 attaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaagga 24616660  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 23693783 - 23693729
Alignment:
Q  20 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 74  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23693783 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23693729  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 23712223 - 23712169
Alignment:
Q  20 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 74  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23712223 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23712169  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 23730679 - 23730625
Alignment:
Q  20 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 74  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23730679 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23730625  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 23749134 - 23749080
Alignment:
Q  20 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 74  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23749134 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23749080  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 24101976 - 24102032
Alignment:
Q  41 agtacagtagatcaattcaatggagaaactaatccagatatacttcctctggatgag 97  Q
    ||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||    
T  24101976 agtacagtagaccaattcaatggagaaagtaatcctgttatacttcctctggatgag 24102032  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 23693725 - 23693653
Alignment:
Q  126 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 197  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23693725 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23693653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 23712165 - 23712093
Alignment:
Q  126 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 197  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23712165 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23712093  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 23730621 - 23730549
Alignment:
Q  126 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 197  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23730621 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23730549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 23749076 - 23749004
Alignment:
Q  126 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 197  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23749076 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23749004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 23690296 - 23690206
Alignment:
Q  76 agatatacttcctctggatgagaatcaa----gtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaatcccgcaaa 162  Q
    ||||||||||||||||||| ||||||||    |||||||||| ||||||| |  ||||||||||  ||||||||| | |||||||| ||||    
T  23690296 agatatacttcctctggatcagaatcaatcaggtcataacaatgtaatccaataaaaacataacaacattaatataagcaaatcccacaaa 23690206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 24062533 - 24062443
Alignment:
Q  76 agatatacttcctctggatgagaatcaa----gtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaatcccgcaaa 162  Q
    ||||||||||||||||||| ||||||||    |||||||||| ||||||| |  ||||||||||  ||||||||| | |||||||| ||||    
T  24062533 agatatacttcctctggatcagaatcaatcaggtcataacaatgtaatccaataaaaacataacaacattaatataagcaaatcccacaaa 24062443  T

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