View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21214_low_8 (Length: 259)
Name: NF21214_low_8
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21214_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 47078584 - 47078777
Alignment:
| Q |
49 |
taggtaggtagataaataagaaacatcgtagggaaaaaggtggcaaccgtttcagattattaaataacagatgcattcttatgtataggaatattacctt |
148 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47078584 |
taggtagataaataaataagaaacatcgcagggaaaaaggtggcaaccgtttcagattattaaataacagatgcattcttatgtataggaatattacctt |
47078683 |
T |
|
| Q |
149 |
tgatgcaatgtccagatcaagcaagttacaagctgaaagagatagctgcagcaaaagatttgaagaccataagtaattgaccaaggttccaagt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47078684 |
tgatgcaatgtccagatcaagcaagttacaagctgaaagagatagctgcagcaaaagatttgaagaccataagtaattgaccaaggttccaagt |
47078777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 47077105 - 47077133
Alignment:
| Q |
28 |
cattggatgtagtagtggttctaggtagg |
56 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47077105 |
cattggatgtagtagtggttctaggtagg |
47077133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 18229077 - 18228972
Alignment:
| Q |
119 |
atgcattcttatgtataggaatattacctttgatgcaatgtccagatcaagcaagttacaagctgaaagagatagctgcagcaaaagatttgaagaccat |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||| |||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
18229077 |
atgcattcttatgtataggaa-attacctttgatacaatgtcaagatcaagtaagttacttgctgaaagtgataactgcagcaaaagatttgaataccat |
18228979 |
T |
|
| Q |
219 |
aagtaat |
225 |
Q |
| |
|
||||||| |
|
|
| T |
18228978 |
aagtaat |
18228972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University