View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_high_11 (Length: 402)
Name: NF21215_high_11
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 17976354 - 17976726
Alignment:
| Q |
13 |
aaaattacaccaacctttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgatttttccgttatc |
112 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
17976354 |
aaaattacaccaacctttagccgttggataatacacaacttcaaaagccaagttcttatccgccaattccactgcctccgtaaacgatttttctgttatc |
17976453 |
T |
|
| Q |
113 |
ttagcagcagcaccaaacttagtctgtcggcgaaccccgactgagatatttccatctgagcctttcatgaaaattaaggaatcaccgccaactagtttct |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
17976454 |
ttagcagcaccaccaaacttagtctgtcggcgaaccccgactgagatatttccatctgagtctttcatgaaaattaaggaatcaccgccaactagtctct |
17976553 |
T |
|
| Q |
213 |
tcttgtcaacgaactcactccaatcagtggtaagcagatgtcgcaagggagtcccacggtaaacatggcgaaacttccaaactttgccgtgaatgtcact |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17976554 |
tcttgtcaacgaactcactccaatcagtggtaagcagatgtcgcaagggagtcccacggtaaacatggcgaaacttccaaactttgccgtgaatgtcact |
17976653 |
T |
|
| Q |
313 |
gatggagagttcttgaaacggcttttcagtattgaggtcaagtggcgggaagattaatttcgcgcattccact |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17976654 |
gatggagagttcttgaaacggcttttcagtattgaggtcaagtggcgggaagattaatttcgcgcattccact |
17976726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 175 - 381
Target Start/End: Complemental strand, 17914643 - 17914437
Alignment:
| Q |
175 |
tttcatgaaaattaaggaatcaccgccaactagtttcttcttgtcaacgaactcactccaatcagtggtaagcagatgtcgcaagggagtcccacggtaa |
274 |
Q |
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||||||||||| |||||| || ||||||| |||||||||| |||||| ||||||||||||| ||||| | ||| ||||||||||||||||||||||| |
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|
| T |
17914643 |
tttcatgaaaactaaggagtcgccgccaatcagtttcttctcgtcaacaaactcactccaattggtggtgatcaggtgtcgcaagggagtcccacggtag |
17914544 |
T |
|
| Q |
275 |
acatggcgaaacttccaaactttgccgtgaatgtcactgatggagagttcttgaaacggcttttcagtattgaggtcaagtggcgggaagattaatttcg |
374 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||||||| ||| ||||||| ||| | |||||||| | | ||||||||||||||||||||||||||| | |
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|
| T |
17914543 |
acgtggcgaagcttccattctttgccgtgaatgtcagtgactgagagtttctgagaaggcttttcggcctggaggtcaagtggcgggaagattaattttg |
17914444 |
T |
|
| Q |
375 |
cgcattc |
381 |
Q |
| |
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||||||| |
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|
| T |
17914443 |
cgcattc |
17914437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 35273766 - 35273654
Alignment:
| Q |
13 |
aaaattacaccaacctttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgatttttccgttatc |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||||||||| || |||||||| |||||||| ||||||| ||| ||||||||||||||| |
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|
| T |
35273766 |
aaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatc |
35273667 |
T |
|
| Q |
113 |
ttagcagcagcac |
125 |
Q |
| |
|
||||||||||||| |
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|
| T |
35273666 |
ttagcagcagcac |
35273654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 17914814 - 17914695
Alignment:
| Q |
13 |
aaaattacaccaacctttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgatttttccgttatc |
112 |
Q |
| |
|
||||| ||||||||||| ||| || |||||||||||||| || ||||||| |||||| || ||||||||||| ||||| |||| |||||||| | ||| |
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|
| T |
17914814 |
aaaatcacaccaaccttcagcagtaggataatacacaacatcgaaagccatgttcttctccgccaattccacagcctcggtaacagatttttctgctatt |
17914715 |
T |
|
| Q |
113 |
ttagcagcagcaccaaactt |
132 |
Q |
| |
|
|||| |||||||||||||| |
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|
| T |
17914714 |
ttagtggcagcaccaaactt |
17914695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 25090397 - 25090342
Alignment:
| Q |
29 |
ttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccac |
84 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||| | ||||||||||| |
|
|
| T |
25090397 |
ttagccgtcggataatacacaacttgaaatgccatgttcttcccagccaattccac |
25090342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 25148367 - 25148312
Alignment:
| Q |
29 |
ttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccac |
84 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||| | ||||||||||| |
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|
| T |
25148367 |
ttagccgtcggataatacacaacttgaaatgccatgttcttcccagccaattccac |
25148312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 33 - 309
Target Start/End: Complemental strand, 8823743 - 8823464
Alignment:
| Q |
33 |
ccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgatttttccgttatcttagcagcagcaccaaactt |
132 |
Q |
| |
|
|||| |||| |||| ||||||||||||| | |||||||| ||||| ||||||||||| ||| ||||| || ||||||||||||||| |||||||| |
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|
| T |
8823743 |
ccgtaggatgatactcaacttcaaaagcgatgttcttattcgccaactccactgcctccataaccgattctttagttatcttagcagca---ccaaactt |
8823647 |
T |
|
| Q |
133 |
agtctgtcggcgaaccccgactgagatatttccatctgagcctttc------atgaaaattaaggaatcaccgccaactagtttcttcttgtcaacgaac |
226 |
Q |
| |
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||| || || || | ||||| |||||| |||| |||| |||| || ||||||| ||||||||||| || |||||||| | ||| || ||| |
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| T |
8823646 |
agtatgccgacggattccgacaaagatatctccaaatgagtttttctttttcataaaaattacggaatcaccgcagacgagtttcttttcgtccacaaac |
8823547 |
T |
|
| Q |
227 |
tcactccaatcagtggtaagcagatgtcgcaagggagtcccacggtaaacatggcgaaacttccaaactttgccgtgaatgtc |
309 |
Q |
| |
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| |||||||| |||||| | ||| |||| ||||||||| |||||||| ||||||||||||| ||| | |||||| |||||||| |
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|
| T |
8823546 |
ttactccaattagtggtgatcaggtgtctcaagggagttccacggtagacatggcgaaactcccagattttgccatgaatgtc |
8823464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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