View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_high_17 (Length: 357)
Name: NF21215_high_17
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 34627322 - 34627651
Alignment:
| Q |
19 |
ggaataccatttcctgccctaccaggtggaggtttcaggtcaaatgatggtcttggagcatcttcttgcattgcattcnnnnnnncatcaacaaaagcat |
118 |
Q |
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| T |
34627322 |
ggaataccatttcctgccctaccaggtggaggtttcaggtcaaatgatggtcttggagcatcttcttgcattgcattctttttttcatcaacaaaagcat |
34627421 |
T |
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| Q |
119 |
tacttattgattgaacaccctgtttctcctcatttagtgaattttttgaagggttattatttgaagaagaacctgcaattaagattcaagtacatcatgt |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34627422 |
tacttattgattgaacaccatgtttctcctcatttagtgaattttttgaagggttattatttgaagaagaacctgcaattaagattcaagtacatcatgt |
34627521 |
T |
|
| Q |
219 |
caagactagtatatcatcataggcttaattgcaatttcagtcgccttatttttccgtatttacaactttgatccctccacaaattttattcctcaaattt |
318 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34627522 |
caagactagtacatcatcataggcttaattgcaatttcagtcgccttatttttccatatttacaactttgatccctccacaaattttattcctcaaattt |
34627621 |
T |
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| Q |
319 |
caaagtatgtgacattttcccgacctttgc |
348 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
34627622 |
caaagtatgtgacattttcccgacatttgc |
34627651 |
T |
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