View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_high_2 (Length: 619)
Name: NF21215_high_2
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 21 - 601
Target Start/End: Complemental strand, 35228678 - 35228098
Alignment:
| Q |
21 |
aaattatgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacag |
120 |
Q |
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| T |
35228678 |
aaattatgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaactgtggctgcaatagaaggtattcatcaaataaccacag |
35228579 |
T |
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| Q |
121 |
gaagattagtatcactctctgagcaagagctagtggattgtgtgaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgattt |
220 |
Q |
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| T |
35228578 |
gaagattagtatcactctctgagcaagagctagtggattgtgtcaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgattt |
35228479 |
T |
|
| Q |
221 |
catagttaaaaaaggaggaataacaagtgaaacaaattacccttatacaagagttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaa |
320 |
Q |
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| T |
35228478 |
catagttaaaaaaggaggaataacaagtgaaacaaattacccttatacaagggttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaa |
35228379 |
T |
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| Q |
321 |
attaagggatatgagcatgttcccgccaataatgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatattgccgcgacaaaacgcg |
420 |
Q |
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| T |
35228378 |
attaagggatatgagcatgttcccgccaataatgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatatcgccgcgacaaaacgcg |
35228279 |
T |
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| Q |
421 |
cttttcaattttactcaagtggaattttgaaaggaaaatgtggaatttatttagatcatacagtgactatagttggttatggcaccagtgatgatggtgt |
520 |
Q |
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| T |
35228278 |
cttttcaattttactcaagtggaattttgaaaggaaaatgtggaattgatttagatcatacagttactatagttggttatggtaccagtgatgatggtgt |
35228179 |
T |
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| Q |
521 |
gaagtattggctagtgaaaaattcatggggtactaaatggggtgagaaaggatatatcaagattaagagagacgtgcatgc |
601 |
Q |
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| T |
35228178 |
gaagtattggctagtgaaaaattcatggggtactaaatggggtgagaaaggatatatcaagattaagagagacgtgcatgc |
35228098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 31176979 - 31176914
Alignment:
| Q |
56 |
tataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacagg |
121 |
Q |
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| T |
31176979 |
tataggtagttgttgggcattttcaactgtggcttccatagagggtatccaccaaataacaacagg |
31176914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 571
Target Start/End: Complemental strand, 31176515 - 31176467
Alignment:
| Q |
523 |
agtattggctagtgaaaaattcatggggtactaaatggggtgagaaagg |
571 |
Q |
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| T |
31176515 |
agtattggttagtaaaaaattcatggggtactgggtggggtgagaaagg |
31176467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 29746533 - 29746586
Alignment:
| Q |
64 |
gttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataacca |
117 |
Q |
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| T |
29746533 |
gttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataacca |
29746586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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