View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_high_24 (Length: 307)
Name: NF21215_high_24
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_high_24 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 31034071 - 31033797
Alignment:
| Q |
15 |
aattcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaat |
114 |
Q |
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| T |
31034071 |
aattcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaat |
31033972 |
T |
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| Q |
115 |
atcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgcttcaggct |
214 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033971 |
atcgaagtcgtggactaaccctttaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatctcatatctgcttcaggct |
31033872 |
T |
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| Q |
215 |
ggcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggtttt |
289 |
Q |
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| T |
31033871 |
ggcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggtttt |
31033797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 31097993 - 31098170
Alignment:
| Q |
105 |
gatattcaatatcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatct |
204 |
Q |
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||||| ||||||| ||| ||||||||| ||| || || ||||||| ||||| || |||||||||| ||||||| | | ||||| | ||||| ||||| |
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| T |
31097993 |
gatatacaatatcgcagtggtggactaaacctttagtttgtttaggacttggcatcgagtcagaagactaggggaggttttgtgtaaatatctcgtatct |
31098092 |
T |
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| Q |
205 |
gcttcaggctggcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttga |
282 |
Q |
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| T |
31098093 |
gactcaggctggcattgtagtcagggatagttaaaatcattacttctgaagtgggaggaaggcaatgcaatgtcttga |
31098170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 31093211 - 31093302
Alignment:
| Q |
60 |
aaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcaaagtcgtggactaaccctctaccttttttagga |
151 |
Q |
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| T |
31093211 |
aaatgctttcccggaactggatgagatcaaaatcattgggatatggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
31093302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 30925 - 31206
Alignment:
| Q |
8 |
cgaagaaaattcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggat |
107 |
Q |
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|||| |||||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
30925 |
cgaaaaaaattcaggataaaaatgtttcgaccgatactatttcagaaaaggtaagtgctttcctgaaactggataaggtcaaaatcatcgaggtttggat |
31024 |
T |
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| Q |
108 |
attcaatatcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgct |
207 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |
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| T |
31025 |
atgcaatatcaaagttgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatcccatttctgct |
31124 |
T |
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| Q |
208 |
tcaggctggcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggtttt |
289 |
Q |
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| T |
31125 |
tcaggctggcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggtttt |
31206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 1889 - 1964
Alignment:
| Q |
8 |
cgaagaaaattcaggataaaagtgtttcaaccgatactatttcggaaaaggt--aaatgctttcctgaaactggat |
81 |
Q |
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|||| |||||||| |||| ||||||||| || ||||||||||| ||| |||| ||||||||||||| ||| |||| |
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| T |
1889 |
cgaaaaaaattcacgatataagtgtttcgactgatactatttcagaacaggttaaaatgctttcctggaaccggat |
1964 |
T |
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