View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_high_3 (Length: 560)
Name: NF21215_high_3
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 11337903 - 11337338
Alignment:
| Q |
1 |
tggaccaagattttggctggttttctaaaccagttgaaccaatttattaac----atctattgattataatctgaaattctgaattgtgtaaaagaaacc |
96 |
Q |
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| T |
11337903 |
tggaccaagattttggctggttttctaaaccagttgaaccaatttattaacgtccatctattgattataatctgaaattctgaattgtgtaaaagaaacc |
11337804 |
T |
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| Q |
97 |
aatcatcagcatgttaggtgagaattattttatggaagtctgcttgactagttggtatacttcaaatttaagtctacattattgaaaccaaatgcagtcg |
196 |
Q |
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| T |
11337803 |
aatcatcagcatgttaggaaagaattattttatggaagtctgcttgactagttggtatacttcaaatttaagtctacattattgaaaccaaatgcagtcg |
11337704 |
T |
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| Q |
197 |
catctattgattcaaagtattgcactat-aaaaattgtgataaagagatttgtctttgcagttgcatgcggaaatatcacaaattattgaaaattcagaa |
295 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11337703 |
catctattgattcaaagtattgcactatcaaaaattgtgataaagagatttgtctttgcagttgcatgcggaaatatcacaaattattgaaaattcagaa |
11337604 |
T |
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| Q |
296 |
agttaagattagataaaa-taaacgaataaaatcaagagtggcaagtacttgtttggtaaaaactcaagagaaacgacattctatggatccatagataag |
394 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11337603 |
agttaagattagataaaaataaacgaataaaatcaagagtggcaagtacttgtttggtaaaaactcaagagaaacgacattctatggatccatagataag |
11337504 |
T |
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| Q |
395 |
cttaaagctgtctgtgttcatactctatgaatgcatatagtctgtccgttgagaagttattatgtttatgaagggttcaacttcgtactagctacttctg |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11337503 |
cttaaagctgtctgtgttcatactctatgaatgcatatagtctgtccgttgagaagttattatgtttatgaagggttcaacttcgtactagctacttctg |
11337404 |
T |
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| Q |
495 |
aaagagttggtaaaatgtttattgatcataatgtcgcatttaacttttatctgagggaagttttgt |
560 |
Q |
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| T |
11337403 |
aaagagttggtaaaatgtttattgatcataatgtcgcatttaacttttatctgagggaagttttgt |
11337338 |
T |
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