View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21215_high_37 (Length: 250)

Name: NF21215_high_37
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21215_high_37
NF21215_high_37
[»] chr1 (14 HSPs)
chr1 (16-112)||(32524345-32524441)
chr1 (52-110)||(40810517-40810575)
chr1 (49-110)||(2799909-2799970)
chr1 (49-92)||(6122841-6122884)
chr1 (49-92)||(6650642-6650685)
chr1 (49-112)||(9165161-9165224)
chr1 (49-92)||(44961812-44961855)
chr1 (49-110)||(8177150-8177211)
chr1 (53-110)||(29753700-29753757)
chr1 (49-110)||(51703826-51703887)
chr1 (49-109)||(8904461-8904521)
chr1 (49-97)||(15786301-15786349)
chr1 (49-109)||(33700742-33700802)
chr1 (52-92)||(42787258-42787298)
[»] chr4 (8 HSPs)
chr4 (49-110)||(7292766-7292827)
chr4 (49-112)||(37109317-37109380)
chr4 (49-110)||(23378003-23378064)
chr4 (49-92)||(7949440-7949483)
chr4 (49-92)||(9693484-9693527)
chr4 (49-110)||(16581740-16581801)
chr4 (49-110)||(38869815-38869876)
chr4 (49-109)||(33632105-33632165)
[»] chr2 (5 HSPs)
chr2 (49-91)||(6859299-6859341)
chr2 (49-92)||(21195662-21195705)
chr2 (64-110)||(4060182-4060228)
chr2 (49-110)||(2750594-2750655)
chr2 (49-97)||(19322815-19322863)
[»] chr7 (7 HSPs)
chr7 (58-110)||(33222426-33222478)
chr7 (50-110)||(39631892-39631952)
chr7 (49-92)||(9183177-9183220)
chr7 (51-97)||(9608610-9608656)
chr7 (51-97)||(9836182-9836228)
chr7 (49-110)||(26459378-26459439)
chr7 (49-110)||(43215231-43215292)
[»] chr6 (5 HSPs)
chr6 (49-110)||(11306142-11306203)
chr6 (50-110)||(13330135-13330195)
chr6 (49-92)||(20213088-20213131)
chr6 (49-92)||(22107111-22107154)
chr6 (49-110)||(12188271-12188332)
[»] chr5 (5 HSPs)
chr5 (49-110)||(25627104-25627164)
chr5 (49-102)||(26078027-26078080)
chr5 (49-110)||(37258334-37258395)
chr5 (49-107)||(14285208-14285266)
chr5 (52-92)||(3260184-3260224)
[»] chr3 (11 HSPs)
chr3 (49-110)||(28703372-28703433)
chr3 (49-97)||(37788446-37788494)
chr3 (49-92)||(4222188-4222231)
chr3 (63-94)||(30510183-30510214)
chr3 (52-110)||(11642177-11642235)
chr3 (49-83)||(39253744-39253778)
chr3 (49-110)||(30311353-30311414)
chr3 (49-110)||(53412992-53413053)
chr3 (49-97)||(3427534-3427582)
chr3 (49-109)||(15048030-15048090)
chr3 (48-92)||(16140336-16140379)
[»] chr8 (10 HSPs)
chr8 (48-92)||(35690050-35690094)
chr8 (52-92)||(43594304-43594344)
chr8 (49-92)||(11819823-11819866)
chr8 (49-92)||(19703473-19703516)
chr8 (49-92)||(27750777-27750820)
chr8 (49-92)||(33727859-33727902)
chr8 (49-82)||(3624627-3624660)
chr8 (48-92)||(3174791-3174835)
chr8 (58-102)||(18540354-18540398)
chr8 (49-97)||(33017261-33017309)
[»] scaffold1367 (1 HSPs)
scaffold1367 (49-86)||(832-869)
[»] scaffold0180 (1 HSPs)
scaffold0180 (49-110)||(19931-19991)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 32524345 - 32524441
Alignment:
Q  16 attgagatactacaacaacacaaataagggtattgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttagtt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||| ||| |||| |||| |||| |||||||||    
T  32524345 attgagatactacaacaacacaaataagggtattgctcctcttcaagatctcaagttcgattctctctggtgccaatttgagggggttagtttagtt 32524441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 40810517 - 40810575
Alignment:
Q  52 tcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||||| ||||||||||||||||||||| ||| |||| ||||||||| |||||||    
T  40810517 tcctcttcaaggtctcaggttcgattctctctggtgccaatttgagagggttagtttag 40810575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 2799909 - 2799970
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||| |||| |||| |||||||    
T  2799909 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttag 2799970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 6122841 - 6122884
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  6122841 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaat 6122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 6650642 - 6650685
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||    
T  6650642 tgctcctcctcaatgtctcaggttcgattctctctggtgtcaat 6650685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 9165224 - 9165161
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttagtt 112  Q
    |||||||| |||||||||||||||| ||||||||| ||| |||| |||| |||| | |||||||    
T  9165224 tgctcctcctcaaagtctcaggttcaattctctctggtgccaatttgagggggttactttagtt 9165161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 44961812 - 44961855
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||  ||||||||||||||||||||||||||||||    
T  44961812 tgctcctcctcagggtctcaggttcgattctctctagtgtcaat 44961855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 8177211 - 8177150
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| || |||||||||||||||||| ||| |||| |||| |||| |||||||    
T  8177211 tgctcctcctcaaggtttcaggttcgattctctctggtgccaatttgagggggttagtttag 8177150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 29753700 - 29753757
Alignment:
Q  53 cctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||| |||| ||||||||||||||||||||| ||| |||| | ||||||| |||||||    
T  29753700 cctcctcaaggtctcaggttcgattctctctggtgccaatttaagagggttagtttag 29753757  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 51703826 - 51703887
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| ||||||| |||||||||||||||||| || ||||| | ||| ||| |||||||    
T  51703826 tgctcctcctcaaagtttcaggttcgattctctctggtatcaatttaagacggttagtttag 51703887  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 8904461 - 8904521
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagttta 109  Q
    |||||||| |||| |||||| |||||||||||||| ||| |||| |||| |||| ||||||    
T  8904461 tgctcctcctcaaggtctcaagttcgattctctctggtgccaatttgagggggttagttta 8904521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 15786349 - 15786301
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgag 97  Q
    |||||||| |||| ||||||||||||||||||| | |||||||| ||||    
T  15786349 tgctcctcctcaaggtctcaggttcgattctctttggtgtcaatttgag 15786301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 33700802 - 33700742
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagttta 109  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||| | || |||| ||||||    
T  33700802 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaagggggttagttta 33700742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 42787258 - 42787298
Alignment:
Q  52 tcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    ||||| |||||||||||| ||||| ||||||||||||||||    
T  42787258 tcctcctcaaagtctcagattcgagtctctctagtgtcaat 42787298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 7292827 - 7292766
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||| |||| |||||||    
T  7292827 tgctcctcctcaaagtctcaggttcgattctctctagtgccaatttgagggggttagtttag 7292766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 37109380 - 37109317
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttagtt 112  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||| |||| |||| |||||||||    
T  37109380 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagtt 37109317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 23378003 - 23378064
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||||||||||||||||| |||| |||| |||  |||||||    
T  23378003 tgctcctcctcaaggtctcaggttcgattctctctagtgccaatttgagggggctagtttag 23378064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 7949483 - 7949440
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||    
T  7949483 tgctcctcctcaaggtctcaggttcgattctctctggtgtcaat 7949440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 9693527 - 9693484
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  9693527 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaat 9693484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 16581740 - 16581801
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||| ||| ||||| ||| |||| ||||||||| |||||||    
T  16581740 tgctcctcctcaaggtctcaggttctattatctctggtgccaatttgagagggttagtttag 16581801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 38869815 - 38869876
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| |||||||||||||||| |||| ||| |||| |||| |||| |||||||    
T  38869815 tgctcctcctcaaggtctcaggttcgattccctctggtgccaatttgagggggttagtttag 38869876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 33632165 - 33632105
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagttta 109  Q
    |||||||| |||| ||| |||| |||||||||||| |||||||| |||| |||| ||||||    
T  33632165 tgctcctcctcaaggtcccaggatcgattctctctggtgtcaatttgagggggttagttta 33632105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 6859341 - 6859299
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaa 91  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  6859341 tgctcctcttcaaagtctcaggttcgattctctctaatgtcaa 6859299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 21195705 - 21195662
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  21195705 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaat 21195662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 4060228 - 4060182
Alignment:
Q  64 tctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||||||||||||||| |||||||| |||| |||| |||||||    
T  4060228 tctcaggttcgattctctctggtgtcaatttgagggggttagtttag 4060182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 2750655 - 2750594
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    ||||| || |||| |||||| |||||||||||||||||| |||| |||| |||| |||||||    
T  2750655 tgctcttcctcaaggtctcatgttcgattctctctagtgccaatttgagggggttagtttag 2750594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 19322815 - 19322863
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgag 97  Q
    ||||||||||||| ||||| |||| |||||||||||||| |||| ||||    
T  19322815 tgctcctcttcaaggtctctggtttgattctctctagtgccaatttgag 19322863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 33222426 - 33222478
Alignment:
Q  58 tcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  33222426 tcaaggtctcaggttcgattctctctggtgtcaatttgagagggttagtttag 33222478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 39631892 - 39631952
Alignment:
Q  50 gctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    ||||||| |||| ||||||||||||||||||||| ||| |||| |||| |||| |||||||    
T  39631892 gctcctcctcaaggtctcaggttcgattctctcttgtgccaatttgagggggttagtttag 39631952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 9183220 - 9183177
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||    
T  9183220 tgctcctcctcaaagtctcaggttcgattatctctggtgtcaat 9183177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 9608656 - 9608610
Alignment:
Q  51 ctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgag 97  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  9608656 ctcctcctcaagatctcaggttcgattctctctagtgtcaatttgag 9608610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 9836228 - 9836182
Alignment:
Q  51 ctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgag 97  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  9836228 ctcctcctcaagatctcaggttcgattctctctagtgtcaatttgag 9836182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 26459439 - 26459378
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||| |||  |||| |||||||    
T  26459439 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgaaggggttagtttag 26459378  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 43215231 - 43215292
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| |||||||||||||||||||||  || |||| |||| |||| |||||||    
T  43215231 tgctcctcctcaaggtctcaggttcgattctctcttatgccaatttgagggggttagtttag 43215292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 11306203 - 11306142
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    ||||| ||||||| ||||||||||||||||||||| ||| |||| |||| |||| |||||||    
T  11306203 tgctcatcttcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttag 11306142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 13330135 - 13330195
Alignment:
Q  50 gctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    ||||||| |||| ||||||| ||||||||||||| ||| |||| ||||||||| |||||||    
T  13330135 gctcctcctcaaggtctcagattcgattctctcttgtgccaatttgagagggttagtttag 13330195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 20213088 - 20213131
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  20213088 tgctcctcctcaatgtctcaggttcgattccctctagtgtcaat 20213131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 22107111 - 22107154
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  22107111 tgctcctcctcaatgtctcaggttcgattccctctagtgtcaat 22107154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 12188332 - 12188271
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| || ||| |||||||||||||||||| |||| |||| |||| |||||||    
T  12188332 tgctcctcctcaaggtttcaagttcgattctctctagtgccaatttgagggggttagtttag 12188271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 25627104 - 25627164
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  25627104 tgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttgag-gggttagtttag 25627164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 26078080 - 26078027
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggt 102  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| |||| ||||    
T  26078080 tgcttctcttcaaggtctcaggttcgattctctctagtgccaatttgagggggt 26078027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 37258395 - 37258334
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| || |||||||||||||||||| |||||||| |||| |||| |||||||    
T  37258395 tgctcctcctcaaggtttcaggttcgattctctctggtgtcaatttgagggggttagtttag 37258334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 14285208 - 14285266
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtt 107  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||| |||| |||| ||||    
T  14285208 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtt 14285266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 3260224 - 3260184
Alignment:
Q  52 tcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||||||||||||||||| ||||||| |||| |||||    
T  3260224 tcctcttcaaagtctcaggttcaattctctttagtatcaat 3260184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 28703433 - 28703372
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||| ||||  ||| |||||||    
T  28703433 tgctcctcttcaaggtctcaggttcgattctctctggtgccaatttgaggaggttagtttag 28703372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 37788494 - 37788446
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgag 97  Q
    |||||||| |||| ||||||||||||||||||||||||| |||| ||||    
T  37788494 tgctcctcctcaaggtctcaggttcgattctctctagtgccaatttgag 37788446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 4222188 - 4222231
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||    
T  4222188 tgctcctcctcaaagtcttaggttcgattctctctggtgtcaat 4222231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 94
Target Start/End: Complemental strand, 30510214 - 30510183
Alignment:
Q  63 gtctcaggttcgattctctctagtgtcaatct 94  Q
    ||||||||||||||||||||||||||||||||    
T  30510214 gtctcaggttcgattctctctagtgtcaatct 30510183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 11642235 - 11642177
Alignment:
Q  52 tcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    ||||| |||| ||||||||||||||| ||| |||||||||| | ||||||| |||||||    
T  11642235 tcctcctcaaggtctcaggttcgattatctttagtgtcaatttaagagggttagtttag 11642177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 39253744 - 39253778
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctct 83  Q
    ||||||||||||| |||||||||||||||||||||    
T  39253744 tgctcctcttcaaggtctcaggttcgattctctct 39253778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 30311353 - 30311414
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||||||||||| | ||| |||| |||| |||| |||||||    
T  30311353 tgctcctcctcaaggtctcaggttcgattctctttggtgccaatttgagggggttagtttag 30311414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 53412992 - 53413053
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||| ||||||||| ||| |||| |||| |||| |||||||    
T  53412992 tgctcctcctcaaggtctcaggttcaattctctctggtgccaatttgagggggttagtttag 53413053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 3427582 - 3427534
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgag 97  Q
    |||||||| |||| ||||||| ||||||||||||||||| |||| ||||    
T  3427582 tgctcctcctcaaggtctcagattcgattctctctagtgccaatttgag 3427534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 15048090 - 15048030
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagttta 109  Q
    |||||||| |||| ||||||||||||||| ||||| ||| |||| |||| |||| ||||||    
T  15048090 tgctcctcctcaaggtctcaggttcgattatctctggtgccaatttgagggggttagttta 15048030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 16140336 - 16140379
Alignment:
Q  48 ttgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||    
T  16140336 ttgctcctct-caaagtctcatgttcgattttctctagtgtcaat 16140379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 35690094 - 35690050
Alignment:
Q  48 ttgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||    
T  35690094 ttgctcctcctcaaggtctcaggttcgattctctctggtgtcaat 35690050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 43594344 - 43594304
Alignment:
Q  52 tcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  43594344 tcctcctcaaggtctcaggttcgattctctctagtgtcaat 43594304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 11819823 - 11819866
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  11819823 tgctcctcctcaaggtctcaggttcgattcactctagtgtcaat 11819866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 19703516 - 19703473
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||||| |||||||||||    
T  19703516 tgctcctcctcaaggtctcaggttcgattctccctagtgtcaat 19703473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 27750777 - 27750820
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  27750777 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaat 27750820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 33727902 - 33727859
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  33727902 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaat 33727859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 3624627 - 3624660
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctc 82  Q
    ||||||||||||| ||||||||||||||||||||    
T  3624627 tgctcctcttcaaggtctcaggttcgattctctc 3624660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 3174835 - 3174791
Alignment:
Q  48 ttgctcctcttcaaagtctcaggttcgattctctctagtgtcaat 92  Q
    |||||| || |||| ||||||||||||||||||||| ||||||||    
T  3174835 ttgctcatcctcaaggtctcaggttcgattctctctggtgtcaat 3174791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 18540354 - 18540398
Alignment:
Q  58 tcaaagtctcaggttcgattctctctagtgtcaatctgagagggt 102  Q
    |||| ||||||||||||||||||||| ||| |||| |||||||||    
T  18540354 tcaaggtctcaggttcgattctctctggtgccaatttgagagggt 18540398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 33017261 - 33017309
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgag 97  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||| ||||    
T  33017261 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgag 33017309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 869 - 832
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagt 86  Q
    |||||||| || ||||||||||||||||||||||||||    
T  869 tgctcctcctcgaagtctcaggttcgattctctctagt 832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 19991 - 19931
Alignment:
Q  49 tgctcctcttcaaagtctcaggttcgattctctctagtgtcaatctgagagggtaagtttag 110  Q
    |||||||| |||| ||||||||||||||||||||| |||| ||| |||| |||| |||||||    
T  19991 tgctcctcctcaaggtctcaggttcgattctctctggtgttaatttgag-gggttagtttag 19931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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