View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_high_40 (Length: 238)
Name: NF21215_high_40
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39093280 - 39093501
Alignment:
| Q |
1 |
tttcacatcaaccatgtttaaataccccaattcacaacaccttcttccatctcaaattgaattcctctttcttttctccgaaaatcttatcgtgttgctg |
100 |
Q |
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| T |
39093280 |
tttcacatcaaccatgtttaaataccccaattcacaacaccttcttccatctcaaattgaattcctctttcttttctccgaaaatctcatcgtgttgctg |
39093379 |
T |
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| Q |
101 |
agattcttattcaacgatgtccattggagacaacaaagaaaacattcctccagtttataccaatggggaaaataagaagaagaattcaatttctatcatg |
200 |
Q |
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| T |
39093380 |
agattcttattcaacgatgtccattggagacaacaaagaaaacattcctccagtttataccaatggggaaaataagaagaagaattcaatttctatcatg |
39093479 |
T |
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| Q |
201 |
gcctcatctttcaagaagaata |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39093480 |
gcctcatctttcaagaagaata |
39093501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 39231835 - 39231885
Alignment:
| Q |
48 |
catctcaaattgaattcctctttcttttctccgaaaatcttatcgtgttgc |
98 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
39231835 |
catctcaaattgaattcctcattcttttctccgaaaatctcatcttgttgc |
39231885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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