View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_high_6 (Length: 526)
Name: NF21215_high_6
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 24830643 - 24830149
Alignment:
| Q |
16 |
ctcacaactttgaagagtgtatttctctatttagaacaaattacaacaataactactaatctaaaaaataatggaaacaataatttctctacatcaaaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24830643 |
ctcacaactttgaagagtgtatttctctatttagaacaaattacaacaataactactaatctaaaaaataatggaaacaataatttctctacatcaaaga |
24830544 |
T |
|
| Q |
116 |
gatttttatctcttctgaaataatgttcaaagcagaaaaggattaactcctgtaataataggagttaatccttatctgctttggataatgtgtcattctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24830543 |
gatttttatctcttctgaaataatgttcaaagcagaaaaggattaactcctgtaataataggagttgatccttatctgctttggataatgtgtcattctc |
24830444 |
T |
|
| Q |
216 |
atnnnnnnnnntagtgttacagaagaatatatgtgaatattcctagagtgcacttcatgcaagacaatacaatatccttctatagtcactaaaatttgtt |
315 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24830443 |
ataaaaaaa--tagtgttacagatgaatatatgtgaatattcctagagtgcacttcatgcaagacaatacaatatccttctatagtcactaaaatttgtt |
24830346 |
T |
|
| Q |
316 |
tcactcattgtctttcatcatttgctctatctcttcaattctcttcaacactaaactcatttcaggcctttcctcaggcatcatatcagtacactccaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
24830345 |
tcactcattgtctttcatcatttgctctatctcttcaattctcttcaacactaaactcattttaggccttttctcaggcatcatatcagtacactccaat |
24830246 |
T |
|
| Q |
416 |
gctatctcagttaaattcaacattgcatcatgtccatctttttctgctaatatttccaaatcaaatatatctgtagaccaatcattattcaccacag |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24830245 |
gctatctcagttaaattcaacattgcatcatgtccatctttttctgctaatatttccaaatcaaatatatctgtagaccaatcattattcaccacag |
24830149 |
T |
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