View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21215_high_7 (Length: 515)

Name: NF21215_high_7
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21215_high_7
NF21215_high_7
[»] chr4 (16 HSPs)
chr4 (9-494)||(46428066-46428546)
chr4 (120-373)||(46015825-46016078)
chr4 (173-418)||(46027825-46028069)
chr4 (120-304)||(46020784-46020976)
chr4 (172-301)||(46015351-46015479)
chr4 (173-301)||(46020583-46020710)
chr4 (173-365)||(46303777-46303970)
chr4 (173-356)||(46021197-46021381)
chr4 (416-494)||(46027710-46027788)
chr4 (173-301)||(46246223-46246350)
chr4 (179-271)||(41074446-41074537)
chr4 (15-87)||(46020990-46021062)
chr4 (339-373)||(46028345-46028379)
chr4 (182-274)||(14320585-14320676)
chr4 (182-274)||(14321753-14321844)
chr4 (466-494)||(46015761-46015789)
[»] chr8 (2 HSPs)
chr8 (173-279)||(4522907-4523012)
chr8 (173-299)||(4525280-4525403)
[»] chr1 (8 HSPs)
chr1 (173-374)||(3802180-3802384)
chr1 (173-310)||(3802619-3802752)
chr1 (219-334)||(3801740-3801857)
chr1 (250-351)||(3804128-3804229)
chr1 (120-274)||(50668519-50668681)
chr1 (178-290)||(50668040-50668152)
chr1 (317-373)||(3803594-3803650)
chr1 (305-352)||(50669223-50669270)
[»] chr3 (1 HSPs)
chr3 (193-272)||(52806350-52806429)
[»] scaffold0384 (1 HSPs)
scaffold0384 (190-276)||(5721-5806)
[»] scaffold0079 (1 HSPs)
scaffold0079 (204-276)||(7947-8018)


Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 494
Target Start/End: Complemental strand, 46428546 - 46428066
Alignment:
Q  9 atgaagggtgaggttattttaatatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428546 atgaagggtgaggttattttaatatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgca 46428447  T
Q  109 taggaaaaaatagaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatcaa---gaacttgca 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||   |||||||||    
T  46428446 taggaaaaaatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacacatgtcca--------ctcaatcaattagaacttgca 46428355  T
Q  206 ttttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428354 ttttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaa 46428255  T
Q  306 ttaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctactttttgtttcttaac 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  46428254 ttaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctattttttgtttattaac 46428155  T
Q  406 aacatcattcttgcttgtcatataaggctctcgctctgtggctcctaattcttgtttcttggcaacttcgttcttgtttcttgcacgac 494  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46428154 aacatcattcttgcttgtcatataaggctctcgctccgtggcccctaattcttgtttcttggcaacttcgttcttgtttcttgcacgac 46428066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 120 - 373
Target Start/End: Complemental strand, 46016078 - 46015825
Alignment:
Q  120 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatcaagaacttgcattttcataaaaaca 219  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatgtgtatattaacactcaatcaagaacttgcattttcataaaaaca 46015979  T
Q  220 ggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgca 319  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  46015978 ggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgca 46015879  T
Q  320 aagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt 373  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||    
T  46015878 aagaacatatcaatacatcattacagcattgagtaaaacttacttgctcttttt 46015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 173 - 418
Target Start/End: Complemental strand, 46028069 - 46027825
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  46028069 atgtgcatattaacactcaaacaagaacttgcatcttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatc 46027971  T
Q  273 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttt 372  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  46027970 ataacagatggacgaagtacatgttaacctaaattaatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactttctcctct 46027871  T
Q  373 tcgctctgtgccccctactttttgtttcttaacaacatcattcttg 418  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  46027870 tcgcactgtgccccctactttttgtttcttaacaacatcattcttg 46027825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 120 - 304
Target Start/End: Complemental strand, 46020976 - 46020784
Alignment:
Q  120 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatcaagaacttgcattttcataaaaaca 219  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||| ||| |||| ||| |||||||||||||||||||||| |||||||| ||||||    
T  46020976 agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagatagacatatgtgcattttaacactcaatcaagaacttggattttcat-aaaaca 46020878  T
Q  220 ggaaagcaaa------aataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttgg---acgaagtacatgttaacccaa 304  Q
    ||||| |  |      ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||   | | |||||||||||||||||    
T  46020877 ggaaaacttatttgtgaataattgtatcttcacatagttttaaagtcaaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 46015479 - 46015351
Alignment:
Q  172 catgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaat 271  Q
    ||||| |||||||||||||||||||||  |||||||||||||||| ||||||| ||| || |||| ||||||| ||| |||||||| |||||||||| ||    
T  46015479 catgtgcatattaacactcaatcaagaggttgcattttcataaaa-caggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacat 46015381  T
Q  272 cataacagttggacgaagtacatgttaacc 301  Q
    |||||||| |||| ||||| ||||||||||    
T  46015380 cataacagatggatgaagtgcatgttaacc 46015351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 46020710 - 46020583
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| |||||||||||||||||||||  ||||||||||||||||| |||||| |||||| |||||||||||| ||| |||||||| ||| || |||||||    
T  46020710 atgtgcatattaacactcaatcaagaggttgcattttcataaaaa-aggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatc 46020612  T
Q  273 ataacagttggacgaagtacatgttaacc 301  Q
    ||||||| ||||  |||| ||||||||||    
T  46020611 ataacagatggattaagtgcatgttaacc 46020583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 173 - 365
Target Start/End: Original strand, 46303777 - 46303970
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| |||||||||||  |||||||| |||||||| | ||||||  ||||||||| ||| |||||| ||||| |||||||||||||||||||| ||||||    
T  46303777 atgtgcatattaacacaaaatcaagagcttgcattgtaataaaat-aggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatc 46303875  T
Q  273 ataacagttggacgaagtacatgttaa-cccaaattaatttaactgcaaagaacatatcaatataccattacagcattg-agtaaaacttacttt 365  Q
    ||||||| |||| ||| | |||||||| |||||  |||||| || ||||||||||| | ||||   ||| ||| ||||| |||||||||||||||    
T  46303876 ataacagatggatgaaatgcatgttaaccccaagctaatttcacagcaaagaacatgttaatacgacatcacaacattgaagtaaaacttacttt 46303970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 173 - 356
Target Start/End: Complemental strand, 46021381 - 46021197
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| |||||||||| ||||||||||  ||||||||  |||||| |||||||||| ||| |||||| |||||  ||  ||||||||||||  | ||||||    
T  46021381 atgtgcatattaacattcaatcaagaggttgcatttctataaaa-caggaaagcagaaagaattgtgtcttcaaatgattttaaagtcaa--tctaaatc 46021285  T
Q  273 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaat--atac--cattacagcattgagtaaa 356  Q
    ||||||| |||| | ||| ||||||||| |||||||||||||||||||| || |||| |||  ||||  |||||||||||||||||||    
T  46021284 ataacagatggatggagtgcatgttaactcaaattaatttaactgcaaataatatattaattaatacaacattacagcattgagtaaa 46021197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 46027788 - 46027710
Alignment:
Q  416 ttgcttgtcatataaggctctcgctctgtggctcctaattcttgtttcttggcaacttcgttcttgtttcttgcacgac 494  Q
    ||||||||||   ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  46027788 ttgcttgtcaagcaaggctctcgctctgtggcccctaattcttgtttcttagcaacttcgttcttgtttcttgcacgac 46027710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 46246223 - 46246350
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| |||||||||| ||||||||||  ||||||||||||||||| ||||||  ||||| |||||||||||| ||  |||||||| | | || |||||||    
T  46246223 atgtgcatattaacattcaatcaagaggttgcattttcataaaaa-aggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatc 46246321  T
Q  273 ataacagttggacgaagtacatgttaacc 301  Q
    ||||||| ||||  |||| ||||||||||    
T  46246322 ataacagatggattaagtgcatgttaacc 46246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 41074537 - 41074446
Alignment:
Q  179 atattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaat 271  Q
    ||||||||||| |||||||| || |||||||| ||||| ||  |||||||||| |||||||||||| ||| |||||||||||||||| |||||    
T  41074537 atattaacactaaatcaagacctagcattttcttaaaa-cattaaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 46021062 - 46020990
Alignment:
Q  15 ggtgaggttattttaatatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagcca 87  Q
    ||||||||||||||||||||||||||| ||||||| |||||   |||| |||||||||||| |||||||||||    
T  46021062 ggtgaggttattttaatatggctgaaagtgttaaaaagaaagaaagaaaaaaaaagacaacacacaacagcca 46020990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 373
Target Start/End: Complemental strand, 46028379 - 46028345
Alignment:
Q  339 attacagcattgagtaaaacttactttctcctttt 373  Q
    |||||||||||||||||||||||||||||||||||    
T  46028379 attacagcattgagtaaaacttactttctcctttt 46028345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 14320676 - 14320585
Alignment:
Q  182 ttaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 274  Q
    |||||| ||||||| ||  ||||||| |||||||| |||||||||||||  |||||||||||| ||| ||| || ||| || || ||||||||    
T  14320676 ttaacaatcaatcatgagattgcattctcataaaa-caggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcat 14320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 14321844 - 14321753
Alignment:
Q  182 ttaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 274  Q
    |||||| ||||||| ||  |||||||||||| ||| |||||||||||||  |||||||||||| ||| ||| || ||| || || ||||||||    
T  14321844 ttaacaatcaatcatgagattgcattttcatgaaa-caggaaagcaaaatgaattgtatcttcccatggttctacagttaatatctaaatcat 14321753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 46015789 - 46015761
Alignment:
Q  466 ggcaacttcgttcttgtttcttgcacgac 494  Q
    |||||||||||||||||||||||||||||    
T  46015789 ggcaacttcgttcttgtttcttgcacgac 46015761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 4522907 - 4523012
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||||| ||||||    
T  4522907 atgtgcattttaacactcaatcaagagcttgaattttcataaaa-caggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatc 4523005  T
Q  273 ataacag 279  Q
    |||||||    
T  4523006 ataacag 4523012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 4525280 - 4525403
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| ||||||||||||||||||||| ||||  ||||||| |||||| ||||||||||| |||||  ||||| ||| |||||||||||||||  || |||    
T  4525280 atgtgcatattaacactcaatcaagagcttgatttttcat-aaaacaagaaagcaaaaagaattg--tcttcacatggttttaaagtcaaaacctagatc 4525376  T
Q  273 ataacagttggacgaagtacatgttaa 299  Q
    ||||||| |||| ||||| ||| ||||    
T  4525377 ataacagatggatgaagtgcattttaa 4525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 374
Target Start/End: Original strand, 3802180 - 3802384
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| ||||||||||||||| |||||  ||| ||||||||||||  |||||||||||| |||||||| |||| ||| ||||||||||| |||| ||||||    
T  3802180 atgtgcatattaacactcaaacaagaggttgtattttcataaaat-aggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatc 3802278  T
Q  273 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatat---caata--tac-cattacagcattgagtaaaacttactttc 366  Q
    ||||||  || | ||| | ||| |||  ||||||||||||||| ||||  |||||||   ||| |  | |  ||||||||||||||||||||||||||||    
T  3802279 ataacatatgaaagaaatgcatattacgccaaattaatttaaccgcaa--aacatattgacaagaagtgcaaattacagcattgagtaaaacttactttc 3802376  T
Q  367 tccttttc 374  Q
    ||||||||    
T  3802377 tccttttc 3802384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 3802619 - 3802752
Alignment:
Q  173 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||| |||||||||||||||||||||  |||||||||||| |||| |||||| |||||  |||||||||||| |||  ||||||||||||||| |||       
T  3802619 atgtgcatattaacactcaatcaagaggttgcattttcat-aaaataggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaa--- 3802714  T
Q  273 ataacagttggacgaagtacatgttaacccaaattaat 310  Q
    ||||||  |||| ||||| |||| || |||||||||||    
T  3802715 ataacaaatggaagaagtgcatgctagcccaaattaat 3802752  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 3801740 - 3801857
Alignment:
Q  219 aggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgtt--aacccaaattaatttaact 316  Q
    ||||||||| ||| |||||| ||||| ||| |||||||||||||||| ||||||||||||| |||| ||| | ||||||  | |||||| |||||| |||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcact 3801839  T
Q  317 gcaaagaacatatcaata 334  Q
    ||||||||| ||| ||||    
T  3801840 gcaaagaacgtattaata 3801857  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 3804128 - 3804229
Alignment:
Q  250 gttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcatt 349  Q
    |||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| ||| || |  ||||||||||||| |||| | ||| ||| ||||    
T  3804128 gttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatcacaacatt 3804227  T
Q  350 ga 351  Q
    ||    
T  3804228 ga 3804229  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 50668681 - 50668519
Alignment:
Q  120 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacaca---------tgtccatattaacactcaatcaagaacttgcattttc 210  Q
    ||||||||||||| | ||||| ||||| ||| ||||||| |||||||||||| |         ||| ||||||||||||| ||||||| |||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacataaccaacttatgtgcatattaacactcgatcaagagcttgcattttc 50668582  T
Q  211 ataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 274  Q
    || ||| ||| |||||||||| |||| ||| ||| |||  || |||||||||||| ||||||||    
T  50668581 at-aaagcagtaaagcaaaaagaattctattttcacatgcttctaaagtcaaaatctaaatcat 50668519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 50668152 - 50668040
Alignment:
Q  178 catattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataa-ttgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 276  Q
    |||||||||| ||||| |||| ||||||||||||||||  |||  ||||||||| || |||||||||| ||| ||| |||||||||||| |||||||| |    
T  50668152 catattaacattcaattaagagcttgcattttcataaag-cagtgaagcaaaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatga 50668054  T
Q  277 cagttggacgaagt 290  Q
    ||  ||||||||||    
T  50668053 catatggacgaagt 50668040  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 3803594 - 3803650
Alignment:
Q  317 gcaaagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt 373  Q
    ||||||||||||  | || | |||||| |||||||||||||||||||||||||||||    
T  3803594 gcaaagaacatagtattacaacattacggcattgagtaaaacttactttctcctttt 3803650  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 50669270 - 50669223
Alignment:
Q  305 attaatttaactgcaaagaacatatcaatataccattacagcattgag 352  Q
    ||||||| |||||||||||||| ||||||| | |||||||||||||||    
T  50669270 attaattcaactgcaaagaacacatcaatagaacattacagcattgag 50669223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 52806350 - 52806429
Alignment:
Q  193 tcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 272  Q
    |||||| ||| ||| |||||||||||| ||||| ||||| ||||| |||||| ||| ||| |||||||||||| ||||||    
T  52806350 tcaagagcttccatgttcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatc 52806429  T

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Target: scaffold0384 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 5721 - 5806
Alignment:
Q  190 caatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 276  Q
    |||||||||  || ||||||||||||| || |||| |||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  5721 caatcaagagttttcattttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 5806  T

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Target: scaffold0079 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 7947 - 8018
Alignment:
Q  204 cattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 276  Q
    ||||||||||||| || |||| |||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  7947 cattttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 8018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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