View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_10 (Length: 434)
Name: NF21215_low_10
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_10 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 47782176 - 47781773
Alignment:
| Q |
16 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47782176 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaatagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
47782077 |
T |
|
| Q |
116 |
gagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47782076 |
gagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattg |
47781977 |
T |
|
| Q |
216 |
cttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattccaat |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47781976 |
cttcttttttgtttggacatgcttgtgtgagattgaatctggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattccaat |
47781877 |
T |
|
| Q |
316 |
gacgtttactttgtcattgttttggccatagttggtgttgtagaaaccgtagtcaatttttgagttgaaagtgaggtagataaaagcgattttgaggttg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47781876 |
gacgtttactttgtcattgttttggccatagttggtgttgtagaaaccgtagtcaatttttgagttgaaagtgaggtagataaaagcgattttgaggttg |
47781777 |
T |
|
| Q |
416 |
ttgt |
419 |
Q |
| |
|
|||| |
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|
| T |
47781776 |
ttgt |
47781773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 47788390 - 47787987
Alignment:
| Q |
16 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
115 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| ||| |||||||||||||||||| |||||| |
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| T |
47788390 |
atacttacgatgtgagtcaccatttatagccttgcttcttaaatcattcaacaattgttttaccaagatattaaattgatctgccattgttgcattgttc |
47788291 |
T |
|
| Q |
116 |
gagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattg |
215 |
Q |
| |
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||||||| | |||||| || |||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47788290 |
aagttccatgcaaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattg |
47788191 |
T |
|
| Q |
216 |
cttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattccaat |
315 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47788190 |
cttcttttttgtttggacatgcttgtgttagattgaatttggaaccaattaggcatttgcgacaatcttgaggattaatgtctcctctacatattccaat |
47788091 |
T |
|
| Q |
316 |
gacgtttactttgtcattgttttggccatagttggtgttgtagaaaccgtagtcaatttttgagttgaaagtgaggtagataaaagcgattttgaggttg |
415 |
Q |
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| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||| |||||||||| |
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| T |
47788090 |
ggcgtttactgtgtcattgttttggccatagttggtgttgtagaaaccgtagtcaatttttgagttgtaagtgaggtgcatgatagcgaatttgaggttg |
47787991 |
T |
|
| Q |
416 |
ttgt |
419 |
Q |
| |
|
|||| |
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|
| T |
47787990 |
ttgt |
47787987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 47811705 - 47811301
Alignment:
| Q |
16 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
115 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || |||||||||| |||| |||| ||| | || | | ||||||||||| ||||| |||||| |
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| T |
47811705 |
atacttacgatgtgagtcaccatttatagccttgttttttaaatcattcaacaattgttttatcacactattgaattgatctgccaaagttgcattgttc |
47811606 |
T |
|
| Q |
116 |
gagttccac-atagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatc---ctcgtaccatcca |
211 |
Q |
| |
|
||||||| | | |||| || |||| |||||| | ||||||||||| ||||||||||||||||| | ||| ||||||| ||| ||||||||||||| |
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| T |
47811605 |
acgttccaccaaattata-gcaggccacatttcgctgaggcctaatatcgaacggtctgaataacgcagcatgcatttctgatcagcctcgtaccatcca |
47811507 |
T |
|
| Q |
212 |
attgcttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattc |
311 |
Q |
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|||||||||||||||||||||||||| | ||| |||| | |||| |||| | || ||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
47811506 |
attgcttcttttttgtttggacatgcttctgttagataggattttgaactaacgagacatttgcgacaatcttcaggattaatgtctcctctacatattc |
47811407 |
T |
|
| Q |
312 |
caatgacgtttactttgtcattgttttggccatagttggtgttgtagaaaccgtagtcaatttttgagttgaaagtgaggtagataaaagcgattttgag |
411 |
Q |
| |
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|||||| |||||||||||| | ||||||||| || || || |||||||||||||||| || ||||||||||||||||||||| || |||||||||||||| |
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| T |
47811406 |
caatgaggtttactttgtcctcgttttggccgtaatttgtattgtagaaaccgtagttaacttttgagttgaaagtgaggtatatgaaagcgattttgag |
47811307 |
T |
|
| Q |
412 |
gttgtt |
417 |
Q |
| |
|
|||||| |
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| T |
47811306 |
gttgtt |
47811301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 47778144 - 47778050
Alignment:
| Q |
140 |
ccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttcttttttgtttggaca |
234 |
Q |
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|
|||||||| || |||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |
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| T |
47778144 |
ccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggaca |
47778050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 6523810 - 6523718
Alignment:
| Q |
158 |
aatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttcttttttgtttggacatgcctgtgtgagattg |
250 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| ||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgtgagattg |
6523718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 6521836 - 6521743
Alignment:
| Q |
130 |
ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
223 |
Q |
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|||||| || ||||||||||| || || ||||| ||||||| ||| ||||| ||||| |||| ||||| | |||||||||||||||||||||| |
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| T |
6521836 |
ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttctttt |
6521743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 47760265 - 47760314
Alignment:
| Q |
296 |
tctcctctacatattccaatgacgtttactttgtcattgttttggccata |
345 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
47760265 |
tctcctctacagagtccaatggcgtttactttgtcagtgttttggccata |
47760314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 6506946 - 6506992
Alignment:
| Q |
177 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
223 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
6506946 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
6506992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 971 - 1017
Alignment:
| Q |
177 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
223 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
971 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
1017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 8624 - 8670
Alignment:
| Q |
177 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
223 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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|
| T |
8624 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
8670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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