View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_12 (Length: 391)
Name: NF21215_low_12
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 14513577 - 14513940
Alignment:
| Q |
18 |
ggttgaactctgattaaacatcgtgtgttctcatgtttgtttttgaattgcagatcctggtttcaagcagactttgccgcgctatgttcgcacgcctgct |
117 |
Q |
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| T |
14513577 |
ggttgaactctgattaaacatcgtgtgttctcatgtttgtttctgaattgcagatcctggtttcaagcagactttgccgcgctatgttcgcgcgcctgct |
14513676 |
T |
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| Q |
118 |
gttttcaagtgccatagagtatctgctattggcaatggggaagatgaacttgcttacttggccactgtgaatattagtggccatgtattcaaagggtttc |
217 |
Q |
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| T |
14513677 |
gttttcaagtgccatagagtttctgctattggcaatggtgaagatgaacttgcttacttggccactgtgaatattagtggccatgtatttaaagggtttc |
14513776 |
T |
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| Q |
218 |
tctatgatcaaggagttgatgacaaaaatgaaacaatgccttgtgtttcagaattgcaacttggaagtaatggaagtggaaagagtaatagagaatgttc |
317 |
Q |
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| T |
14513777 |
tctatgatcaaggagttgatgacaaaaatgaaacaatgccttgtgtttcagaattgcaacttggaagtaatggaagtggaaagagtaatagagaatgttc |
14513876 |
T |
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| Q |
318 |
tgcttctgctattgaggttacaactagtgcttaccctgcttctgcttgttgagattgttttatg |
381 |
Q |
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| T |
14513877 |
ttcttctgctattgaggttccaactagtgcttaccctgcttctgcttgttgagattgttttatg |
14513940 |
T |
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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 299
Target Start/End: Complemental strand, 4202173 - 4201992
Alignment:
| Q |
115 |
gctgttttcaagtgccatagagtatctgctattggcaatggggaagatgaacttgcttacttggccactgtgaatattagtggccatgtattcaaagggt |
214 |
Q |
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| T |
4202173 |
gctgtattcaggtgccatagagtaactgctattggcaatggtgaagatgaatttgcttacttggccacagttcatattagtggccatgttttcaaagggt |
4202074 |
T |
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| Q |
215 |
ttctctatgatcaaggagttgatgacaaaaatgaaacaatgccttgtgtttcagaattgcaacttggaagtaatggaagtggaaa |
299 |
Q |
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| T |
4202073 |
ttctctatgatcatggtgttgatgggaaaaat---ccaatgccttgtgtttcagaacttcaattgggaaataattgtagtggaaa |
4201992 |
T |
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