View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_15 (Length: 375)
Name: NF21215_low_15
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 7659478 - 7659825
Alignment:
| Q |
20 |
tttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659478 |
tttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccac |
7659577 |
T |
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| Q |
120 |
accagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccga |
219 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7659578 |
accagtctattgcagccttggcaaaaattcatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttctggctccgttgccga |
7659677 |
T |
|
| Q |
220 |
acaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcacct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7659678 |
acaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagaccttgtgtttgcacct |
7659777 |
T |
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| Q |
320 |
tatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctc |
367 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7659778 |
tatggtccgcggtggcgaatgctccgaaaaatctcctcagttcatctc |
7659825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 7624207 - 7623860
Alignment:
| Q |
20 |
tttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7624207 |
tttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccac |
7624108 |
T |
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| Q |
120 |
accagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7624107 |
accagtctattgcagccttggcaaaaatccatggccctttaatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccga |
7624008 |
T |
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| Q |
220 |
acaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcacct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7624007 |
acaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcccct |
7623908 |
T |
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| Q |
320 |
tatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctc |
367 |
Q |
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| T |
7623907 |
tatggtccgaggtggcgaatgctccgaaaaatctcctccgttcatctc |
7623860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 24 - 352
Target Start/End: Original strand, 7675109 - 7675437
Alignment:
| Q |
24 |
tgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacacca |
123 |
Q |
| |
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|||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||| | || ||||| |||||||| |
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| T |
7675109 |
tgaagtttgcaacaagaacttcatcactaccactcccacctggaccaaaaccatggccaataataggtaacttaccacaccttggccctgcaccacacca |
7675208 |
T |
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| Q |
124 |
gtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaa |
223 |
Q |
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||| ||||| ||||||| ||| | |||||||||||||||||||||||||||| | ||||| || |||||||||||||| | |||||| || |||||| |
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| T |
7675209 |
atctcttgcaaccttggctgaaacctatggccctttgatgcacctcaaattaggctcggtggatgtgatcgtggcggcttcggcctccgtggcggaacaa |
7675308 |
T |
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| Q |
224 |
ttcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatg |
323 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |||| |||||| |||||||| |||||||||| ||||||| |
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| T |
7675309 |
ttcttaaaggtacatgatgctaactttagtagccggccacccaatgccggagctaagtacataggttataattatcaagaccttgtgtttggtccttatg |
7675408 |
T |
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| Q |
324 |
gtccacggtggcgaatgctccgaaaaatc |
352 |
Q |
| |
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||||| |||||||| | ||| |||||||| |
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| T |
7675409 |
gtccaaggtggcgactactcagaaaaatc |
7675437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 45477623 - 45477762
Alignment:
| Q |
197 |
gcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataact |
296 |
Q |
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|||||||| | ||| || || |||||||||||||| ||||||||| | || ||| |||||||||| | ||| |||| || ||||| |||| ||||| | |
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| T |
45477623 |
gcggcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataatt |
45477722 |
T |
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| Q |
297 |
atcaagatcttgtgtttgcaccttatggtccacggtggcg |
336 |
Q |
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||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
45477723 |
atcaagatcttgtttttgctccttatggaccacggtggcg |
45477762 |
T |
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