View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_20 (Length: 319)
Name: NF21215_low_20
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 50269321 - 50269614
Alignment:
| Q |
3 |
aaagaatagtcaaagattaaatacaagccatctataatctcctaccagagaacacaatgacaaactctaagatt-aaaaacgtctaaatttagccgactt |
101 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
50269321 |
aaagaatagtcaaagattaaatagaagccatctataatctcctaccagagaacacaatgacaaactctaagatttaaaaacgtttaaatttagccgactt |
50269420 |
T |
|
| Q |
102 |
taaaaagaactattagcctcaaatgagataaaataaatcaaaccatacgatgtagggctaactgacaccatctagtttgatacnnnnnnncgcgtcttac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
50269421 |
taaaaagaactattagcctcaaatgagataaaataaattaaaccatacgatgtagggctaattgacaccatctagtttgatacaaaaaaa-atgtcttac |
50269519 |
T |
|
| Q |
202 |
taaaagatatatttgcttgcatcgcccccttacatataaaagttctcatgttctcatggcacctgtatggttgatcaatatcacataacattgacaccac |
301 |
Q |
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||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
50269520 |
taaaagatatatttgcttgcatcgcccccggacatataaaa--------gctctcatggcacctgtgtagttgatcaatatcacataacattgacaccac |
50269611 |
T |
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