View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_21 (Length: 317)
Name: NF21215_low_21
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 42854746 - 42854446
Alignment:
| Q |
1 |
aagcaagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaaccgaataaatggttatatcttagcctacatattca |
100 |
Q |
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| T |
42854746 |
aagcaagtcacaaataccactgcaatgaacactacattttttacaatctgaataaaaaatttaaaccgaataaatggttatatcttagcctacatattca |
42854647 |
T |
|
| Q |
101 |
agtaacatataaaattatatatttacaatgactgagtgccaaaaaattgttttcctttcccgttttttagatataaatccaactatttattttgaaccat |
200 |
Q |
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| T |
42854646 |
agtaacatataaaattatatatttacaatgactgagggccaaaaaattgttttcctttcccgttttttagatataaatccaactatttattttgaaccaa |
42854547 |
T |
|
| Q |
201 |
tttataacataagctggcttccaagattaagattacatgttcatgtcaatagatagtttcaagaaaatatgaatctacagagtattacagttattgataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
42854546 |
tttataacataagctggcttccaagattaagattacatgttcatgtcaatagatagtttcaagaaaatatgaatctacaaagtattacagctattgataa |
42854447 |
T |
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| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
42854446 |
g |
42854446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 189 - 301
Target Start/End: Complemental strand, 42848113 - 42848002
Alignment:
| Q |
189 |
attttgaaccattttataacataagctggcttccaagattaagattacatgttcatgtcaatagatagtttcaagaaaatatgaatctacagagtattac |
288 |
Q |
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||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | || |||||||| |
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| T |
42848113 |
attttgaacgaatttataacataagctgtcttccaagattaagattacattttcatgtcaatagttagtttcaagaaaatatgaattttca-agtattac |
42848015 |
T |
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| Q |
289 |
agttattgataag |
301 |
Q |
| |
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| |||||||||| |
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| T |
42848014 |
acctattgataag |
42848002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 42848200 - 42848129
Alignment:
| Q |
4 |
caagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaaccgaataaat |
75 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42848200 |
caagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaactgaataaat |
42848129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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