View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21215_low_22 (Length: 316)

Name: NF21215_low_22
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21215_low_22
NF21215_low_22
[»] chr6 (10 HSPs)
chr6 (124-224)||(14766215-14766314)
chr6 (128-219)||(21118239-21118329)
chr6 (128-219)||(14763663-14763753)
chr6 (228-316)||(21118746-21118834)
chr6 (228-316)||(32342082-32342170)
chr6 (228-316)||(21118464-21118552)
chr6 (126-215)||(32342305-32342391)
chr6 (126-219)||(20727667-20727755)
chr6 (236-316)||(14763871-14763951)
chr6 (236-316)||(14766448-14766528)
[»] chr5 (9 HSPs)
chr5 (124-224)||(41341251-41341348)
chr5 (126-224)||(7400279-7400375)
chr5 (228-316)||(35428357-35428448)
chr5 (228-316)||(35429940-35430028)
chr5 (228-316)||(41341037-41341125)
chr5 (228-314)||(7400502-7400588)
chr5 (162-224)||(35429752-35429814)
chr5 (234-306)||(7658980-7659052)
chr5 (153-198)||(7659199-7659244)
[»] chr7 (14 HSPs)
chr7 (125-217)||(5447675-5447768)
chr7 (124-224)||(5439661-5439760)
chr7 (124-224)||(5448671-5448770)
chr7 (234-316)||(5448902-5448984)
chr7 (234-316)||(5439892-5439974)
chr7 (125-175)||(5438699-5438749)
chr7 (234-316)||(15589829-15589911)
chr7 (234-291)||(5438899-5438956)
chr7 (129-224)||(15589602-15589694)
chr7 (126-196)||(15588511-15588578)
chr7 (234-316)||(15588695-15588777)
chr7 (234-291)||(5447909-5447966)
chr7 (159-196)||(1813543-1813580)
chr7 (173-205)||(18673778-18673810)
[»] chr1 (11 HSPs)
chr1 (124-224)||(6138408-6138505)
chr1 (126-215)||(52022349-52022435)
chr1 (128-224)||(3742461-3742556)
chr1 (228-308)||(52022131-52022211)
chr1 (234-316)||(6139815-6139897)
chr1 (228-304)||(6138206-6138282)
chr1 (258-316)||(5397344-5397402)
chr1 (143-224)||(5397541-5397619)
chr1 (174-216)||(6140037-6140079)
chr1 (235-305)||(43834965-43835035)
chr1 (175-215)||(17645483-17645523)
[»] chr3 (15 HSPs)
chr3 (124-219)||(3371630-3371722)
chr3 (126-224)||(17730878-17730974)
chr3 (126-224)||(19032109-19032205)
chr3 (126-224)||(43979431-43979526)
chr3 (128-224)||(1027011-1027105)
chr3 (228-316)||(38183140-38183228)
chr3 (143-217)||(38182994-38183068)
chr3 (228-316)||(17731101-17731189)
chr3 (228-316)||(19032332-19032420)
chr3 (166-219)||(40195750-40195803)
chr3 (229-316)||(1026796-1026883)
chr3 (234-316)||(3371405-3371487)
chr3 (133-204)||(21344517-21344585)
chr3 (240-316)||(49582603-49582680)
chr3 (239-291)||(21344727-21344779)
[»] chr4 (9 HSPs)
chr4 (126-217)||(14508946-14509036)
chr4 (228-308)||(14508733-14508813)
chr4 (163-216)||(4528729-4528782)
chr4 (124-215)||(31322837-31322929)
chr4 (126-196)||(45676540-45676607)
chr4 (228-291)||(10550051-10550114)
chr4 (228-316)||(31327200-31327288)
chr4 (228-307)||(31322582-31322661)
chr4 (124-184)||(8445696-8445753)
[»] chr8 (4 HSPs)
chr8 (4-78)||(14513957-14514032)
chr8 (228-316)||(392343-392431)
chr8 (124-216)||(7284415-7284504)
chr8 (228-316)||(7278087-7278175)
[»] chr2 (9 HSPs)
chr2 (228-316)||(4660143-4660230)
chr2 (133-217)||(20594841-20594922)
chr2 (159-217)||(33300962-33301020)
chr2 (228-316)||(20594616-20594704)
chr2 (182-219)||(7371844-7371881)
chr2 (174-215)||(38472142-38472183)
chr2 (177-220)||(10751298-10751342)
chr2 (176-224)||(33300900-33300948)
chr2 (124-186)||(33302436-33302495)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 14766215 - 14766314
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaa-cacaagaatataacgtggaaactccaaaaccggagaaaaaaccagga 222  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||    
T  14766215 actgttaggaaataacagggctgaagaagaaaaa--ataaacacaatcacaaacacaagaatataacgtggaaactccaaaatcggagaaaaaaccacga 14766312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 21118239 - 21118329
Alignment:
Q  128 ttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaacca 219  Q
    ||||||| ||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  21118239 ttaggaattaacaaggctgaagaagaaaaataa-aaacacaatcactacacaagaatataacgtggaaactccaaaatcgaagaaaaaacca 21118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 14763663 - 14763753
Alignment:
Q  128 ttaggaaataatagggctgaagaagaaaaataataaacacaatcacaa-cacaagaatataacgtggaaactccaaaaccggagaaaaaacca 219  Q
    ||||||||||| ||||||||| ||||||||  |||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||    
T  14763663 ttaggaaataacagggctgaaaaagaaaaa--ataaacacaatcacaaacacaaaaatataacatggaaactccaaaaccgaagaaaaaacca 14763753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 21118746 - 21118834
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |||||  |||||||    
T  21118746 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttc 21118834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 32342170 - 32342082
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| |||||||||||||  ||||||| ||||||||||||||||||||| |||  |||||||| |||| |||||||||||||||||||    
T  32342170 tcagatataagcttaaagtgttactgaccggtgcatctaaaaacaaagaacttatattcaatatatagccttggtcttccctttgcttc 32342082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 21118464 - 21118552
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||||| |||| |||| |||||  |||||||    
T  21118464 tcagatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttc 21118552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 32342391 - 32342305
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaa 215  Q
    ||||||||||||| |  ||||||||||||||||||   ||| |||||| ||||||||||||||||||||||||||||||  |||||||||    
T  32342391 tgttaggaaataacatagctgaagaagaaaaataa---acataatcactacacaagaatataacgtggaaactccaaaattggagaaaaa 32342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 20727755 - 20727667
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaacca 219  Q
    ||||||||||||| || ||||||||| ||||||||     ||||||||||||||||||||||| |||||||||| |||| | ||||||||||||    
T  20727755 tgttaggaaataacagagctgaagaaaaaaaataa-----acaatcacaacacaagaatataatgtggaaactctaaaatcagagaaaaaacca 20727667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 14763871 - 14763951
Alignment:
Q  236 aagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||||||||| |||||||| ||| |||||||||||||||||| ||| |||||||  |||| ||||||||||| |||||||    
T  14763871 aagcttaaagtgctactgactggtacatctaaaaacaaagaaactagattcaataaatagctttggtcttccccttgcttc 14763951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 14766448 - 14766528
Alignment:
Q  236 aagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||||||||| ||| ||||  ||||||||||||||||| ||| |||||||||||| |||| ||||||||| | |||||||    
T  14766448 aagcttaaagtgctattgactagtgcatctaaaaacaaaaaaactaggttcaatatatagccttggtcttctccttgcttc 14766528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 41341348 - 41341251
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggac 223  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||    
T  41341348 actgttaggaaataatagggctgaagaagaaaaataa---acacaatcacaacacaagaatataacatggaaactccaaaaccagaggaaaaaccatgac 41341252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 7400279 - 7400375
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    ||||||||||||| ||||| ||||||||||||  ||||| |||||||||||| |||||||||| |||||||||| ||||| ||||||||||||| ||||    
T  7400279 tgttaggaaataaaagggccgaagaagaaaaa--ataaatacaatcacaacataagaatataatgtggaaactctaaaacgggagaaaaaaccatgacc 7400375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 35428357 - 35428448
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaat---taggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||||   |||||||||||| |||| ||||||||||| |||||||    
T  35428357 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaattactaggttcaatatatagccttggtcttcccattgcttc 35428448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 35429940 - 35430028
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||| |||  ||||||||||| |||||||    
T  35429940 tcagatataagcttaaagtgctactgactggtgcttctaaaaacaaagaaactaggttcaatatatagtcttggtcttccccttgcttc 35430028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 41341125 - 41341037
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| || | ||||||||||| |||||||    
T  41341125 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggtttaatatataactttggtcttccccttgcttc 41341037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 7400502 - 7400588
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgct 314  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||| |||  ||||||||||| |||||    
T  7400502 tcagatataagcttaaagtgctactgaccggtgcatctaaaaacaaagaacctaggttcaatatatagtcttggtcttccccttgct 7400588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 35429752 - 35429814
Alignment:
Q  162 aaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||| ||||    
T  35429752 aaacacaatcacaacacaagaatataacgtggaaactccaaaactagaggaaaaaccacgacc 35429814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 7659052 - 7658980
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttc 306  Q
    ||||||||||||| ||||| || ||| ||||| |||||||||||  ||  |||||||| ||||||||||||||    
T  7659052 ataagcttaaagtgctactaactggtacatctgaaaacaaagaacctaaattcaatatatagcattggtcttc 7658980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 7659244 - 7659199
Alignment:
Q  153 aaaaataataaacacaatcacaacacaagaatataacgtggaaact 198  Q
    ||||| ||||| || ||||||||||||||||||||| |||||||||    
T  7659244 aaaaaaaataagcataatcacaacacaagaatataatgtggaaact 7659199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 5447675 - 5447768
Alignment:
Q  125 ctgttaggaaataatagggctgaagaagaaaaataataaacacaatcac-aacacaagaatataacgtggaaactccaaaaccggagaaaaaac 217  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  5447675 ctgttaggaaataacagggctgaagaagaaaaaaaataaacacaatcacaaacacaagaatataatgtggaaactctaaaaccggagaaaaaac 5447768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 5439661 - 5439760
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaac-acaagaatataacgtggaaactccaaaaccggagaaaaaaccagga 222  Q
    ||||||||||||||| |||| |||||||||||||  ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||    
T  5439661 actgttaggaaataacagggttgaagaagaaaaa--ataaacacaatcacaaatacaagaatataacgtggaaactccaaaaccgtagaaaaaaccatga 5439758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 5448671 - 5448770
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaac-acaagaatataacgtggaaactccaaaaccggagaaaaaaccagga 222  Q
    ||||||||||||||| |||| |||||||||||||  ||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||||||| ||    
T  5448671 actgttaggaaataacagggttgaagaagaaaaa--ataaacacaatcacaaatacaagaatataatgtggaaactccaaaaccgtagaaaaaaccatga 5448768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 5448902 - 5448984
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||    
T  5448902 ataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagcattggtattccccttgcttc 5448984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 5439892 - 5439974
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||| |||||||||| ||||| |||||||    
T  5439892 ataagcttaaagtgctactgactggtgcatctaaaaacaaataaactaggttcaatatatagcattggtattccccttgcttc 5439974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 5438699 - 5438749
Alignment:
Q  125 ctgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaa 175  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5438699 ctgttaggaaataacagggctgaagaagaaaaaaaataaacacaatcacaa 5438749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 15589829 - 15589911
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    |||||||||| || ||||||||  ||||||||||| ||||||||  ||| |||||||| |||| ||||||||||| |||||||    
T  15589829 ataagcttaatgtgctactgacctgtgcatctaaatacaaagaacctagattcaatatatagccttggtcttccccttgcttc 15589911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 5438899 - 5438956
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat 291  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||| || |||||||||    
T  5438899 ataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactatgttcaatat 5438956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 15589602 - 15589694
Alignment:
Q  129 taggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    |||||||||| | |||| ||||||||||||||    ||||||||   |||||||||||||| ||||||||||||||||| ||||||| ||| ||||    
T  15589602 taggaaataacatggctaaagaagaaaaataag---cacaatcattgcacaagaatataacttggaaactccaaaaccgaagaaaaacccatgacc 15589694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 15588511 - 15588578
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaa 196  Q
    ||||||||||||| |||||| ||  ||||||||||    ||||||||||||||||||||||||||||||||    
T  15588511 tgttaggaaataagagggctaaaatagaaaaataag---cacaatcacaacacaagaatataacgtggaaa 15588578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 15588695 - 15588777
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    |||||||||| || |||||||| |||||||||||||||||||||  ||   ||||||| |||| ||||||||||  |||||||    
T  15588695 ataagcttaacgtgctactgacaggtgcatctaaaaacaaagaacgtaccatcaatatatagccttggtcttcctcttgcttc 15588777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 5447909 - 5447966
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat 291  Q
    ||||||||||||| ||| |||| ||||||||||| |||||||||| || |||||||||    
T  5447909 ataagcttaaagtgctattgactggtgcatctaagaacaaagaaactatgttcaatat 5447966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 1813543 - 1813580
Alignment:
Q  159 aataaacacaatcacaacacaagaatataacgtggaaa 196  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  1813543 aataaacacaatcacaacacaaaaatataatgtggaaa 1813580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 18673778 - 18673810
Alignment:
Q  173 caacacaagaatataacgtggaaactccaaaac 205  Q
    ||||||||||| |||||||||||||||||||||    
T  18673778 caacacaagaacataacgtggaaactccaaaac 18673810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 6138505 - 6138408
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggac 223  Q
    ||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||    
T  6138505 actgttaggaaataacagggctgaagaagaaaaatat---acacaatcacaacacaagaatataacgtggaaactccaaaactagagaaaaaaccacgac 6138409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 52022435 - 52022349
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaa 215  Q
    |||||||||||||||||| ||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  52022435 tgttaggaaataatagggttgaagaagaaaaataag---cacaatcacaacacaaggatataacgtggaaactccaaaaccgaagaaaaa 52022349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 3742461 - 3742556
Alignment:
Q  128 ttaggaaataatagggctgaagaagaaaaataataaacacaatcacaa-cacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    ||||||||||| ||||||||||||| ||||  |||||||||||||||| ||||||||||||||||| |||||| |||| | |||||||||||| ||||    
T  3742461 ttaggaaataacagggctgaagaaggaaaa--ataaacacaatcacaaacacaagaatataacgtgaaaactcaaaaatcagagaaaaaaccacgacc 3742556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 52022211 - 52022131
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccc 308  Q
    ||||| || |||||||||| ||| |||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  52022211 tcagatatgagcttaaagtgctaatgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggtcttccc 52022131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 6139897 - 6139815
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    |||||||||||||  || |||| |||||||||||||||||||||| || ||||||||| |||| ||||||||||| |||||||    
T  6139897 ataagcttaaagtgttattgaccggtgcatctaaaaacaaagaaactatgttcaatatatagccttggtcttccccttgcttc 6139815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 6138282 - 6138206
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtct 304  Q
    ||||| ||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||| |||  |||||||    
T  6138282 tcagatataagcttaaagtgctactgactggtgcatcaaaaaacaaagaaactaggttcaatatatagtcttggtct 6138206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 5397402 - 5397344
Alignment:
Q  258 gtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||||||||||||||||||  |||||  ||||| |||| |||||||||||||||||||    
T  5397402 gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccctttgcttc 5397344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 5397619 - 5397541
Alignment:
Q  143 gctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    ||||||||||||||   |||| || ||||||||||||||||||||| ||   ||||||||||| | ||||||||||| ||||    
T  5397619 gctgaagaagaaaa---ataagcaaaatcacaacacaagaatataaagtaagaactccaaaactgaagaaaaaaccacgacc 5397541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 6140079 - 6140037
Alignment:
Q  174 aacacaagaatataacgtggaaactccaaaaccggagaaaaaa 216  Q
    ||||||||||||||||||| ||||||||||| | |||||||||    
T  6140079 aacacaagaatataacgtgaaaactccaaaatcagagaaaaaa 6140037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 43835035 - 43834965
Alignment:
Q  235 taagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtctt 305  Q
    |||| ||||||| |||||||| | ||||||| ||||| ||||| ||||||||||||| |||| || |||||    
T  43835035 taagtttaaagtgctactgactgatgcatcttaaaactaagaacttaggttcaatatatagccttagtctt 43834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 17645483 - 17645523
Alignment:
Q  175 acacaagaatataacgtggaaactccaaaaccggagaaaaa 215  Q
    |||||||||||||| | |||||||| |||||||||||||||    
T  17645483 acacaagaatataatgcggaaactctaaaaccggagaaaaa 17645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 3371722 - 3371630
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaacca 219  Q
    ||||||| ||||||||||||||||||||||||||||||   | ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  3371722 actgttatgaaataatagggctgaagaagaaaaataat---cgcaatcactacacaagaatataacgaggaaactccaaaaccggagaaaaaacca 3371630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 17730878 - 17730974
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccgga-gaaaaaaccaggacc 224  Q
    ||||||||||||| |||| |||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  17730878 tgttaggaaataacagggttgaagaagcaaaata---aacacaatcacaacacaagaatataacgtggaaactccaaaaccggaggaaaaaaccacgacc 17730974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 19032109 - 19032205
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccgga-gaaaaaaccaggacc 224  Q
    ||||||||||||| |||| |||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  19032109 tgttaggaaataacagggttgaagaagcaaaata---aacacaatcacaacacaagaatataacgtggaaactccaaaaccggaggaaaaaaccacgacc 19032205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 43979526 - 43979431
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    ||||||||||||| | |||||||||||||||||||   ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  43979526 tgttaggaaataacatggctgaagaagaaaaataa---acacaataactacacaagaatataacgtggaaactccaaaactggagaaaaaaccacgacc 43979431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 1027105 - 1027011
Alignment:
Q  128 ttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||| | ||| |||||||||||| ||||||||||||| |||||||||||| ||||    
T  1027105 ttaggaaataacagggttgaagaagaaaaa--ataaacacaatcactatacaggaatataacgtgtaaactccaaaaccagagaaaaaaccacgacc 1027011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 38183140 - 38183228
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||| |||| ||||||||| | |||||||    
T  38183140 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactagattcaatatatagccttggtcttcaccttgcttc 38183228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 38182994 - 38183068
Alignment:
Q  143 gctgaagaagaaaaataataaacacaatcacaa-cacaagaatataacgtggaaactccaaaaccggagaaaaaac 217  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  38182994 gctgaagaagaaaaa-aataaacacaatcacaaacacaagaatataacgtggaaactccaaaaccgaagacaaaac 38183068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 17731101 - 17731189
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| ||||||||||| || ||||||| |||||||||||| |||| |||| |||||| |||||||    
T  17731101 tcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttc 17731189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 19032332 - 19032420
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| ||||||||||| || ||||||| |||||||||||| |||| |||| |||||| |||||||    
T  19032332 tcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttc 19032420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 40195803 - 40195750
Alignment:
Q  166 acaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaacca 219  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  40195803 acaatcacaatacaagaatataacgtggaaattccaaaaccagagaaaaaacca 40195750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 1026883 - 1026796
Alignment:
Q  229 cagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    |||| ||||||||| ||||||| |||| |||||||||||||||||||||  || |||| |||| |||| ||||| ||||| |||||||    
T  1026883 cagatataagcttatagtactattgactggtgcatctaaaaacaaagaacctacgttcgatatatagccttggtattccccttgcttc 1026796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 3371487 - 3371405
Alignment:
Q  234 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||| ||| |||| | ||||||||||||||| |||  |||||| ||||| |||| |||||||||||||||||||    
T  3371487 ataagtttaaagttctattgactgatgcatctaaaaacaaggaacctaggtttaatatatagccttggtcttccctttgcttc 3371405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 21344517 - 21344585
Alignment:
Q  133 aaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaa 204  Q
    |||||||| || ||||||||||||||||    |||||||||||||||||||||||||||| |||||| ||||    
T  21344517 aaataataaggttgaagaagaaaaataag---cacaatcacaacacaagaatataacgtgaaaactctaaaa 21344585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 49582680 - 49582603
Alignment:
Q  240 ttaaagtactactgacgggtgcatctaaaaacaaagaaattaggt-tcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||||| ||||||||   ||||||||||||||||||| |||||| |  |||| || ||||||||||||| |||||||    
T  49582680 ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtctttatatctaacattggtcttccccttgcttc 49582603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 21344727 - 21344779
Alignment:
Q  239 cttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat 291  Q
    |||||||| |||||||  |||||||||||||||||| ||  ||||||||||||    
T  21344727 cttaaagtgctactgattggtgcatctaaaaacaaataacctaggttcaatat 21344779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 14509036 - 14508946
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatata--acgtggaaactccaaaaccggagaaaaaac 217  Q
    ||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  14509036 tgttaggaaataacagggctgaagaagaaaaataa---acacaatcacaacacaagaatatataacgtggaaactccaaaaccagagaaaaaac 14508946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 14508813 - 14508733
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccc 308  Q
    ||||| ||||||||||||| |||||||| ||| ||||||||||| |||||  |||||||||||| |||| |||||||||||    
T  14508813 tcagatataagcttaaagtgctactgactggtacatctaaaaactaagaacctaggttcaatatatagccttggtcttccc 14508733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 4528782 - 4528729
Alignment:
Q  163 aacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaa 216  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  4528782 aacataatcacaacacaagaatataacgtggaaacttcgaaaccggagaaaaaa 4528729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 31322929 - 31322837
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaa------gaatataacgtggaaactccaaaaccggagaaaaa 215  Q
    |||||||||||||||  ||||||||||||||||||||    ||||||||||||||||      |||||||||||||||||||||||| ||||||||||    
T  31322929 actgttaggaaataa--gggctgaagaagaaaaataag---cacaatcacaacacaaaaacaagaatataacgtggaaactccaaaatcggagaaaaa 31322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 45676540 - 45676607
Alignment:
Q  126 tgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaa 196  Q
    ||||||||||||| |||| |||||||||||||||   |||||||| | |||||||||||||||||||||||    
T  45676540 tgttaggaaataacagggttgaagaagaaaaata---aacacaattataacacaagaatataacgtggaaa 45676607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 10550051 - 10550114
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat 291  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||||||  ||||||||||||    
T  10550051 tcagatataaacttaaagtgctactgactggtgcatctaaaaacaaagaacctaggttcaatat 10550114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 31327288 - 31327200
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| |||| |||||||| ||||| || |||| || |||||| | ||||  |||||| ||||| ||||||||||||| ||||||||||    
T  31327288 tcagatataaacttaaagtgctacttactggtgtatataaaaatagagaacctaggttgaatatatagcattggtctttcctttgcttc 31327200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 31322661 - 31322582
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttcc 307  Q
    ||||| ||||||||||||| | | |||  |||||||||||||||||||||  ||||| |||||| || | ||||||||||    
T  31322661 tcagatataagcttaaagtgccattgaatggtgcatctaaaaacaaagaacctaggtccaatatataaccttggtcttcc 31322582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 8445753 - 8445696
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaat 184  Q
    |||||||||||| || ||||||| |||||||||   |||||||||||||| ||||||||||    
T  8445753 actgttaggaaacaacagggctgcagaagaaaa---ataaacacaatcactacacaagaat 8445696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 14513957 - 14514032
Alignment:
Q  4 ttgtcataatgataagttggttttagaaaataaaattgtattcttacataa-tttttgtgttgattattggctcta 78  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||    
T  14513957 ttgtcataatgataagttggttttagaaaataaaattgtatttttatagaattttttgtgttgattattggctcta 14514032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 392343 - 392431
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| ||||| || | || ||||||||||||||||| || ||||||||| |||| ||||||||||| |||||||    
T  392343 tcagatataagcttaaagtgctactaactgatgtatctaaaaacaaagaaactacgttcaatatatagccttggtcttccccttgcttc 392431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 7284415 - 7284504
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaa 216  Q
    ||||||| ||||||| || ||||||||||||||||||    || ||||| ||||||||||||||||||||||||| |||||  ||||||||||    
T  7284415 actgttaagaaataacagagctgaagaagaaaaataag---cataatcataacacaagaatataacgtggaaacttcaaaattggagaaaaaa 7284504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 7278087 - 7278175
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||||||| |||||||| |||||||||| ||||||||||  ||||| |||||| |||   ||||| |||| |||||||    
T  7278087 tcagatataagcttaaagtgctactgactggtgcatctacaaacaaagaacctaggtccaatatatagtcatggtcctcccattgcttc 7278175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 4660143 - 4660230
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| |||| |||||||| |||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  4660143 tcagatataatcttaaagtgctactgaccggtgcatc-aaaaacaaagaaactaggttcaatatatagcattggtcttccccttgcttc 4660230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 20594922 - 20594841
Alignment:
Q  133 aaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaac 217  Q
    |||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||| |  |||||||||    
T  20594922 aaataaaagggctgaagaagaaaaataa---acacaatcacaacacaagaatataacgtgaaaactccaaaatcaaagaaaaaac 20594841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 33300962 - 33301020
Alignment:
Q  159 aataaacacaatcacaacacaagaatataacgtggaaactccaaaaccggagaaaaaac 217  Q
    |||||||||||||||||||||||||||||||||| |||||  |||| ||||| ||||||    
T  33300962 aataaacacaatcacaacacaagaatataacgtgaaaactttaaaatcggaggaaaaac 33301020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 20594704 - 20594616
Alignment:
Q  228 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttc 316  Q
    ||||| ||||||||| |||  || |||| |||||||||||||| ||||||  |||||||||||| |||  ||||||||||| |||||||    
T  20594704 tcagatataagcttagagtgttattgaccggtgcatctaaaaataaagaacctaggttcaatatatagtcttggtcttccccttgcttc 20594616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 7371881 - 7371844
Alignment:
Q  182 aatataacgtggaaactccaaaaccggagaaaaaacca 219  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7371881 aatataacgtggaaactctaaaaccggagaaaaaacca 7371844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 38472183 - 38472142
Alignment:
Q  174 aacacaagaatataacgtggaaactccaaaaccggagaaaaa 215  Q
    |||||||||| |||||||||||||| | ||||||||||||||    
T  38472183 aacacaagaacataacgtggaaacttccaaaccggagaaaaa 38472142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 10751342 - 10751298
Alignment:
Q  177 acaagaatataacgtggaaa-ctccaaaaccggagaaaaaaccag 220  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||    
T  10751342 acaagaatataacgttgaaaactccaaaactggagaaaaaaccag 10751298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 33300900 - 33300948
Alignment:
Q  176 cacaagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 224  Q
    ||||||||||||| |||||||||||| || || ||||||||||| ||||    
T  33300900 cacaagaatataatgtggaaactccacaatcgaagaaaaaaccacgacc 33300948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 33302436 - 33302495
Alignment:
Q  124 actgttaggaaataatagggctgaagaagaaaaataataaacacaatcacaacacaagaatat 186  Q
    ||||||||||||||| |  ||||||||||||||||||  |   ||||||||||||||||||||    
T  33302436 actgttaggaaataacatagctgaagaagaaaaataagta---caatcacaacacaagaatat 33302495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University