View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_23 (Length: 311)
Name: NF21215_low_23
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 10011640 - 10011371
Alignment:
| Q |
18 |
taaaccagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactataggaatcacagtgctctcttcccttggttcaacaacacagcat |
117 |
Q |
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| T |
10011640 |
taaaccagcatctatcataactttttttattctagctcttcttcccatgctaactttaggaatcacagtgctctcttcccttggttcaacagcacagtat |
10011541 |
T |
|
| Q |
118 |
ccatccaactcttcaacgccatctccatagctgcatgttctccgccagaatccttcatcaaccttcttcaacaacgaaatttacgacatgttttggatcg |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
10011540 |
ccatccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttca----------tcaacaacgaaatttacgacatgttttggatcg |
10011451 |
T |
|
| Q |
218 |
attcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttgtccaaatccaagctctgtg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10011450 |
attcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttgtccaaatccaagctctgtg |
10011371 |
T |
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