View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21215_low_25 (Length: 305)

Name: NF21215_low_25
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21215_low_25
NF21215_low_25
[»] chr1 (2 HSPs)
chr1 (14-106)||(28536945-28537037)
chr1 (14-100)||(35686850-35686936)
[»] chr6 (1 HSPs)
chr6 (29-106)||(7723059-7723136)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 28536945 - 28537037
Alignment:
Q  14 attatactataaaggtatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct 106  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28536945 attatactataaaggtatggaatgtaaatagaggatcaaagacataaatgcttccttgaacatattgcatttgtattttccataacttcatct 28537037  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 35686850 - 35686936
Alignment:
Q  14 attatactataaaggtatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  35686850 attatactataaaggtatggaatataaatagaggatcaaagacataaatgcttccttaaacgtattgcatttgtattttccataact 35686936  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 7723059 - 7723136
Alignment:
Q  29 tatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct 106  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||  |||||||||| |||||||||    
T  7723059 tatggaatataaatataggatcaaagacataaatgtttccttaaacatattgcattcatattttccatcacttcatct 7723136  T

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