View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_26 (Length: 300)
Name: NF21215_low_26
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 1915402 - 1915135
Alignment:
| Q |
13 |
aatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatcatattatacattattcat |
112 |
Q |
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| T |
1915402 |
aatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatcatattatacattgttcat |
1915303 |
T |
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| Q |
113 |
tagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttcnnnnnnncattattttatgtac |
212 |
Q |
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| T |
1915302 |
tagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttctttttttcattattttatgtac |
1915203 |
T |
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| Q |
213 |
ttggagatatgttgtaataggtacactatatg---ataaataaaagttttatttcataatgtacgtac |
277 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1915202 |
ttggagatatgttgtaataggtacactatatgataataaataaaagttttatttcataatgtacgtac |
1915135 |
T |
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