View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_28 (Length: 293)
Name: NF21215_low_28
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 15038837 - 15039095
Alignment:
| Q |
18 |
cagagaagattcactttaagttaaataattgggatttaagtttaactgatcatataagtttcattttcacatcaccagaataatgcaagttgtgaagacc |
117 |
Q |
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| T |
15038837 |
cagagaagattcactttaagttaaataattgggatttaagtttaactgatcatataagtttcattttcacatcaccataataatgcaagttgtcaagacc |
15038936 |
T |
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| Q |
118 |
aaatgaaaataacataacaaaccatgaataatctaatcacagcttgtttgctcacgatagttgaagaacccaccaaaatgcttatttggcagaccaaatt |
217 |
Q |
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| T |
15038937 |
aaatgaaaataacataacaaaccatgaataatctaatcacagcttgtttgcacacgatagttgaagaacccaccaaaatgcttatttggcagaccaaatt |
15039036 |
T |
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| Q |
218 |
ctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatat |
276 |
Q |
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| T |
15039037 |
ctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatat |
15039095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 15029568 - 15029637
Alignment:
| Q |
207 |
cagaccaaattctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatat |
276 |
Q |
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| T |
15029568 |
cagaccaaattctacctcattttccaacatattttcatgagtgtaattagaacttcgtctctaaacatat |
15029637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 15008269 - 15008316
Alignment:
| Q |
207 |
cagaccaaattctacctcattttccaacatattttcacgagtgtaatt |
254 |
Q |
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| T |
15008269 |
cagaccaaattctaccacattttccaacatattttcatgagtgtaatt |
15008316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 15022386 - 15022433
Alignment:
| Q |
207 |
cagaccaaattctacctcattttccaacatattttcacgagtgtaatt |
254 |
Q |
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| T |
15022386 |
cagaccaaattctaccacattttccaacatattttcatgagtgtaatt |
15022433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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