View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21215_low_30 (Length: 268)

Name: NF21215_low_30
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21215_low_30
NF21215_low_30
[»] chr7 (19 HSPs)
chr7 (13-236)||(32944683-32944906)
chr7 (13-82)||(11509606-11509675)
chr7 (13-83)||(18148594-18148664)
chr7 (13-82)||(11509561-11509630)
chr7 (18-82)||(22530012-22530076)
chr7 (12-80)||(34706124-34706191)
chr7 (33-83)||(34706054-34706104)
chr7 (21-83)||(34706087-34706150)
chr7 (18-83)||(18148566-18148629)
chr7 (19-61)||(22529988-22530030)
chr7 (18-102)||(22529931-22530016)
chr7 (18-61)||(34706174-34706217)
chr7 (13-75)||(3386523-3386585)
chr7 (13-55)||(18148549-18148591)
chr7 (13-55)||(34706049-34706091)
chr7 (18-63)||(11509889-11509934)
chr7 (18-82)||(11391800-11391864)
chr7 (18-82)||(22529997-22530061)
chr7 (31-82)||(34706021-34706073)
[»] chr3 (20 HSPs)
chr3 (13-82)||(52466270-52466339)
chr3 (13-82)||(3472720-3472789)
chr3 (13-166)||(52466141-52466294)
chr3 (19-166)||(3476002-3476150)
chr3 (13-83)||(39728065-39728136)
chr3 (13-61)||(3586241-3586289)
chr3 (89-166)||(17737339-17737415)
chr3 (19-82)||(15778165-15778229)
chr3 (13-72)||(3475966-3476025)
chr3 (16-67)||(18694494-18694545)
chr3 (16-67)||(18710013-18710064)
chr3 (33-82)||(3475971-3476020)
chr3 (18-83)||(18539049-18539114)
chr3 (18-82)||(5842095-5842159)
chr3 (32-82)||(3262953-3263004)
chr3 (19-82)||(15778120-15778183)
chr3 (13-72)||(18539090-18539149)
chr3 (18-53)||(18706231-18706266)
chr3 (18-68)||(3472704-3472754)
chr3 (13-62)||(18539025-18539074)
[»] chr1 (23 HSPs)
chr1 (18-166)||(52273005-52273154)
chr1 (13-82)||(23633054-23633123)
chr1 (16-83)||(90239-90306)
chr1 (13-83)||(12785272-12785343)
chr1 (13-82)||(9132290-9132359)
chr1 (13-82)||(9132335-9132404)
chr1 (13-82)||(41137858-41137927)
chr1 (100-155)||(23632958-23633013)
chr1 (24-82)||(9132380-9132438)
chr1 (21-82)||(23633099-23633161)
chr1 (13-103)||(23632984-23633078)
chr1 (81-154)||(23633441-23633514)
chr1 (18-82)||(90271-90335)
chr1 (13-133)||(41137775-41137882)
chr1 (13-62)||(9132265-9132314)
chr1 (29-82)||(23633145-23633198)
chr1 (18-82)||(52272930-52272994)
chr1 (16-72)||(52272973-52273029)
chr1 (18-61)||(18514680-18514723)
chr1 (32-79)||(23633178-23633225)
chr1 (18-55)||(23633187-23633224)
chr1 (12-72)||(23633140-23633200)
chr1 (18-62)||(52272990-52273034)
[»] chr4 (21 HSPs)
chr4 (13-83)||(11150598-11150668)
chr4 (24-82)||(15703750-15703808)
chr4 (13-83)||(42597243-42597313)
chr4 (13-82)||(23973118-23973187)
chr4 (24-77)||(25127107-25127160)
chr4 (13-72)||(15703784-15703843)
chr4 (93-166)||(35462293-35462366)
chr4 (18-163)||(15242011-15242160)
chr4 (18-82)||(37838560-37838624)
chr4 (18-82)||(42597289-42597353)
chr4 (13-72)||(19612737-19612796)
chr4 (20-82)||(19612772-19612835)
chr4 (33-138)||(13885253-13885361)
chr4 (13-165)||(14644896-14645047)
chr4 (13-82)||(15703814-15703883)
chr4 (13-61)||(9564917-9564965)
chr4 (13-68)||(13885308-13885366)
chr4 (18-82)||(15703774-15703838)
chr4 (32-82)||(23973091-23973142)
chr4 (18-60)||(18875383-18875425)
chr4 (13-82)||(18875348-18875417)
[»] chr8 (11 HSPs)
chr8 (18-103)||(42145628-42145713)
chr8 (13-77)||(9882567-9882631)
chr8 (17-82)||(12577132-12577197)
chr8 (13-82)||(9882521-9882591)
chr8 (13-76)||(40387802-40387865)
chr8 (18-166)||(42145598-42145750)
chr8 (13-72)||(17289899-17289958)
chr8 (21-78)||(40387764-40387822)
chr8 (13-61)||(12577173-12577221)
chr8 (20-82)||(12577090-12577152)
chr8 (32-80)||(12577072-12577120)
[»] chr2 (12 HSPs)
chr2 (13-83)||(37379722-37379792)
chr2 (13-82)||(20264547-20264614)
chr2 (13-82)||(16092602-16092671)
chr2 (13-80)||(27401575-27401642)
chr2 (13-82)||(20264502-20264571)
chr2 (18-82)||(37379682-37379746)
chr2 (18-82)||(20179904-20179967)
chr2 (18-60)||(38991898-38991940)
chr2 (13-61)||(16092647-16092695)
chr2 (18-82)||(16092561-16092626)
chr2 (32-79)||(20264593-20264641)
chr2 (18-82)||(27401588-27401652)
[»] chr5 (13 HSPs)
chr5 (13-82)||(29496789-29496858)
chr5 (13-82)||(29496834-29496903)
chr5 (13-82)||(29496744-29496813)
chr5 (18-82)||(29496879-29496943)
chr5 (32-82)||(39436973-39437023)
chr5 (18-83)||(19076601-19076666)
chr5 (17-72)||(23959861-23959916)
chr5 (64-119)||(28711003-28711058)
chr5 (18-82)||(29496894-29496958)
chr5 (18-68)||(39436927-39436977)
chr5 (13-70)||(23959878-23959935)
chr5 (24-68)||(14048126-14048170)
chr5 (21-61)||(39436949-39436989)
[»] scaffold0024 (2 HSPs)
scaffold0024 (47-158)||(106966-107081)
scaffold0024 (34-129)||(109063-109162)
[»] scaffold0281 (4 HSPs)
scaffold0281 (14-82)||(852-920)
scaffold0281 (13-82)||(896-965)
scaffold0281 (13-82)||(941-1010)
scaffold0281 (13-68)||(986-1041)
[»] chr6 (13 HSPs)
chr6 (18-82)||(9547898-9547962)
chr6 (33-83)||(19770014-19770064)
chr6 (25-75)||(27572963-27573013)
chr6 (32-82)||(19891954-19892004)
chr6 (18-82)||(28708788-28708852)
chr6 (13-75)||(3851927-3851989)
chr6 (18-60)||(9547883-9547925)
chr6 (13-55)||(19770027-19770069)
chr6 (13-61)||(27572931-27572980)
chr6 (13-53)||(9547938-9547978)
chr6 (18-62)||(19891724-19891768)
chr6 (13-45)||(19891980-19892012)
chr6 (19-55)||(22469043-22469079)
[»] scaffold0498 (4 HSPs)
scaffold0498 (13-166)||(10020-10174)
scaffold0498 (33-82)||(9995-10044)
scaffold0498 (13-72)||(9990-10049)
scaffold0498 (18-60)||(10010-10052)
[»] scaffold0323 (2 HSPs)
scaffold0323 (13-68)||(15533-15588)
scaffold0323 (115-166)||(15583-15634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (13-165)||(172245-172396)
[»] scaffold0449 (3 HSPs)
scaffold0449 (18-87)||(215-284)
scaffold0449 (21-82)||(235-296)
scaffold0449 (13-53)||(219-259)
[»] scaffold0139 (1 HSPs)
scaffold0139 (24-61)||(22674-22711)
[»] scaffold0679 (1 HSPs)
scaffold0679 (18-82)||(2351-2415)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 32944683 - 32944906
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaat 112  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  32944683 aatatcacatctttatataacacatttttaaatcacacatcttcaaatagtatatctttatataacacattattttcacatcgtggaataacacatcaat 32944782  T
Q  113 ttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaattaatatctaaccaattcaaaagatatgataatgaaaataacagacatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32944783 ttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaattaatatctaaccaattcaaaagatatgataatgaaaataacagacatt 32944882  T
Q  213 tattcatgtttttgatcaattgat 236  Q
    |||||||| |||||||||||||||    
T  32944883 tattcatgcttttgatcaattgat 32944906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 11509675 - 11509606
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  11509675 aatatcacatctttatataaaacatctttaaatcacacatcttcaaatagcacatctttatataacacat 11509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 18148664 - 18148594
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    |||||||||||||||||| ||||||| |||||| |||||||||||||||  ||||||||||||||||||||    
T  18148664 aatatcacatctttatatgacacatcgttaaatcacacatcttcaaataacacatctttatataacacatt 18148594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 11509630 - 11509561
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||| |||||||    
T  11509630 aatagcacatctttatataacacatctttaaatcacacatcttcaaataacacatccttatagaacacat 11509561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 22530076 - 22530012
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||| |||||    
T  22530076 cacatctttatataacacatctttatatcacacatattcaaataatacatctttatatagcacat 22530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 34706124 - 34706191
Alignment:
Q  12 gaatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacac 80  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||    
T  34706124 gaatattacatctttatataacacat-tttaaatcacacatcttcaactagcacatctttatataacac 34706191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 34706054 - 34706104
Alignment:
Q  33 cacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  34706054 cacatctttatataacacatcttcaaatagcaaatctttatataacacatt 34706104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 34706087 - 34706150
Alignment:
Q  21 atctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacatt 83  Q
    ||||||||||||||||| |||||||| || |||| || |||| |||||||||||||||||||||    
T  34706087 atctttatataacacatttttaaatagcatcatcatcgaatattacatctttatataacacatt 34706150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18148629 - 18148566
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    |||||||| | |||||||||||||| |||||||||  |||||||  ||||||||||||||||||||    
T  18148629 cacatcttcaaataacacatctttatataacacat--tcaaatatcacatctttatataacacatt 18148566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 22530030 - 22529988
Alignment:
Q  19 acatctttatataacacatctttaaataacacatcttcaaata 61  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  22530030 acatctttatatagcacatctttaaattacacatcttcaaata 22529988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 22530016 - 22529931
Alignment:
Q  18 cacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaata 102  Q
    |||||||||| || ||||||||| |||||||| |||| |||||||  ||||| ||| ||||||||| | || ||||||||||||||    
T  22530016 cacatctttaaattacacatcttcaaataacatcatcgtcaaatacaacatcgttaaataacacatcaattacacatcgttaaata 22529931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 34706174 - 34706217
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaata 61  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||    
T  34706174 cacatctttatataacacgtctttaaatcacacatctttaaata 34706217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3386523 - 3386585
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatat 75  Q
    |||| |||||||||| |||||||||||||| || ||||||||| | |||| |||||| |||||    
T  3386523 aataacacatctttagataacacatctttatatgacacatctttatatagcacatctctatat 3386585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 18148591 - 18148549
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatctt 55  Q
    ||||||||||||||||||||||||| ||||||| | |||||||    
T  18148591 aatatcacatctttatataacacatttttaaatgaaacatctt 18148549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 34706049 - 34706091
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatctt 55  Q
    |||||||||||||||||||||||||||| ||||| || |||||    
T  34706049 aatatcacatctttatataacacatcttcaaatagcaaatctt 34706091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 11509934 - 11509889
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagt 63  Q
    |||||||| ||||| ||||||||| ||| |||||||||||||||||    
T  11509934 cacatcttaatatatcacatcttttaattacacatcttcaaatagt 11509889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 11391864 - 11391800
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||| ||||||||||||||||||  ||| ||| |||| ||||   |||||||||||||||||||    
T  11391864 cacatgtttatataacacatctttgtatagcacgtctttaaatctcacatctttatataacacat 11391800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 22530061 - 22529997
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||| |||||| || |||||| ||||||| | |||| ||||||||| || ||||||    
T  22530061 cacatctttatatcacacatattcaaataatacatctttatatagcacatctttaaattacacat 22529997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 34706021 - 34706073
Alignment:
Q  31 aacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||| || |||| |||||||  |||||||||||||||||||    
T  34706021 aacacatctttaaatagcatcatcgtcaaatatcacatctttatataacacat 34706073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 52466339 - 52466270
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  52466339 aatatcacatctttatataacacatctttaaatcacacatcttcaaatagcacatctttatataccacat 52466270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 3472789 - 3472720
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||    
T  3472789 aatatcacatctttatataacacatctttaaatcacacatctttaaatagcacatcttcatataacacat 3472720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 52466294 - 52466141
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaat 112  Q
    |||| |||||||||||||| ||||||||||||| | |||||||||||||  |||| ||||||||||||||| ||||||| || | | ||||  ||  |||    
T  52466294 aatagcacatctttatataccacatctttaaatcatacatcttcaaataacacatttttatataacacatttttttcacgtcatcagataattcacaaat 52466195  T
Q  113 ttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
    | ||| | |||||||||||||  ||| ||||||  |||||||| || |||||||    
T  52466194 tacacttaatcaaataattcatcaattacacttcgttaaataactcatcaatta 52466141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 3476002 - 3476150
Alignment:
Q  19 acatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcac 117  Q
    |||||||||||||||||||||||||||| || | || | |||||  ||||| ||| ||| ||| | | || ||||| ||||| | ||  |||||||||||    
T  3476002 acatctttatataacacatctttaaatagcatcgtcgttaaataaaacatcattaaatagcacttcagttacacatagttaattcacgtatcaatttcac 3476101  T
Q  118 atcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
    ||||||| ||| ||||||||||||||||| | ||||||||| |||||||    
T  3476102 atcatcatatagttcacaaatcacacttagtcaaataattcatcaatta 3476150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 39728136 - 39728065
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttca-aatagtacatctttatataacacatt 83  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || |  ||||||||||||||||||||    
T  39728136 aatatcacatctttatataacacatctttaaatcacacatcttcagaaaaacacatctttatataacacatt 39728065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 3586241 - 3586289
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaata 61  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3586241 aatatcacatctttatataacacatctttaaatcacacatcttcaaata 3586289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 17737339 - 17737415
Alignment:
Q  89 cacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||| ||||| ||| |||||||    
T  17737339 cacatcgttaaata-cttatcaatttcacatcatcaaataattcacaaattatacttaatcaaatatttcatcaatta 17737415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 15778229 - 15778165
Alignment:
Q  19 acatctttatataa-cacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||  |||||||||||||||||||    
T  15778229 acatctttatataaacacatttttaaatcacacatcttcaaataagacatctttatataacacat 15778165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 3475966 - 3476025
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    ||||||||||||||||||||||||||||||||| | ||||||| | |||  |||||||||    
T  3475966 aatatcacatctttatataacacatctttaaatcatacatctttatataacacatcttta 3476025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 18694545 - 18694494
Alignment:
Q  16 atcacatctttatataacacatctttaaataacacatcttcaaatagtacat 67  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  18694545 atcacatctttatataacacatcttgaaatcaaacatcttcaaatagcacat 18694494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 18710064 - 18710013
Alignment:
Q  16 atcacatctttatataacacatctttaaataacacatcttcaaatagtacat 67  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  18710064 atcacatctttatataacacatcttgaaatcaaacatcttcaaatagcacat 18710013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 3475971 - 3476020
Alignment:
Q  33 cacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||| |||||||||||| ||||  ||||||||||||||||||||    
T  3475971 cacatctttatataacacatctttaaatcatacatctttatataacacat 3476020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18539114 - 18539049
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    |||||||||||||||||||||||||||| | || |  |||||||  |||| |||||||||||||||    
T  18539114 cacatctttatataacacatctttaaatcaaacttaatcaaataacacatatttatataacacatt 18539049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 5842095 - 5842159
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  5842095 cacatgtttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 5842159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 3263004 - 3262953
Alignment:
Q  32 acacatctttaaataacac-atcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  3263004 acacatctttaaataacaccattgtcaaatattacatctttatataacacat 3262953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 15778183 - 15778120
Alignment:
Q  19 acatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||||||| ||| ||||||||| || ||| |||| |||| || ||||||    
T  15778183 acatctttatataacacatctttgaatcacacatctttaactagcacatttttaaatcacacat 15778120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 18539149 - 18539090
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||| | |||  |||||||||    
T  18539149 aatatcacacctttacataacacatctttaaatcacacatctttatataacacatcttta 18539090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 18706266 - 18706231
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatc 53  Q
    |||||||||||||||||||||||||||| |||||||    
T  18706266 cacatctttatataacacatctttaaatcacacatc 18706231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 3472754 - 3472704
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatc 68  Q
    |||||||||| ||| |||||||| | |||||||||| ||||||||||||||    
T  3472754 cacatctttaaatagcacatcttcatataacacatcgtcaaatagtacatc 3472704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 18539074 - 18539025
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatag 62  Q
    |||| ||||| |||||||||||||| ||||||| ||||||||| ||||||    
T  18539074 aataacacatatttatataacacatttttaaatcacacatctttaaatag 18539025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 52273005 - 52273154
Alignment:
Q  18 cacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttca 116  Q
    ||||||||||||||||||||||||||||| || |||| |||||||  ||||| ||| ||| ||| | |  | ||||| ||||| | ||| ||||||||||    
T  52273005 cacatctttatataacacatctttaaatagcatcatcgtcaaataaaacatcattaaatagcacttcaactacacatagttaattcacatatcaatttca 52273104  T
Q  117 catcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
    ||| |||||||||||||||||| ||||||| | ||||||||| |||||||    
T  52273105 cattatcaaataattcacaaattacacttagtcaaataattcatcaatta 52273154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 23633123 - 23633054
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  23633123 aatattacatctttatataacacatctttaaatcacacatcttcaaatagcacatctttgtataacacat 23633054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 90239 - 90306
Alignment:
Q  16 atcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||  ||||||||||||||||||||    
T  90239 atcacatctttatctaacacatcttgaaattacacatcttcaaataacacatctttatataacacatt 90306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 12785272 - 12785343
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttca-aatagtacatctttatataacacatt 83  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || |  ||||||||||||||||||||    
T  12785272 aatatcacatctttatataacacatctttaaatcacacatcttcagaaaaacacatctttatataacacatt 12785343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 9132359 - 9132290
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| ||||||||||||||||||||||||||||  |||| |||||||||  |||||||||||||||||||    
T  9132359 aataacacatctttatataacacatctttaaatcccacaacttcaaataacacatctttatataacacat 9132290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 9132404 - 9132335
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| ||||||||||||||||||||||||||||  |||| |||||||||  |||||||||||||||||||    
T  9132404 aatagcacatctttatataacacatctttaaatcgcacaacttcaaataacacatctttatataacacat 9132335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 41137927 - 41137858
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||| ||| ||||||| ||||||| |||||| ||||||||| |||||||| ||||||||||    
T  41137927 aatatcacatcttaataaaacacatatttaaatcacacatattcaaatagcacatctttgtataacacat 41137858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 23633013 - 23632958
Alignment:
Q  100 ataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataa 155  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||    
T  23633013 ataacacatcattttcacatcatcaaataattcacaaattacacttagtcaaataa 23632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 9132438 - 9132380
Alignment:
Q  24 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||| | ||||||  |||||||||||||||| |||||||||||||||||||    
T  9132438 tttatataacacgtatttaaaccacacatcttcaaatagcacatctttatataacacat 9132380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 23633161 - 23633099
Alignment:
Q  21 atctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||    
T  23633161 atctttatataacacatctttaaatagcatcgtcatcaaatattacatctttatataacacat 23633099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 23633078 - 23632984
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaata----gtacatctttatataacacattattttcacatcgttaaataa 103  Q
    |||| ||||||||| |||||||||||||||||| ||||| |||||||||      |||| |||||||||||||| ||||||||||| | ||||||    
T  23633078 aatagcacatctttgtataacacatctttaaatcacacaacttcaaataacatacacatttttatataacacatcattttcacatcatcaaataa 23632984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 23633514 - 23633441
Alignment:
Q  81 attattttcacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaata 154  Q
    |||| ||||||||| | ||||| |||||||||| |||||||||||||||| ||||||| ||||||  |||||||    
T  23633514 attaatttcacatcttcaaatagcacatcaattacacatcatcaaataatacacaaattacacttctttaaata 23633441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 90271 - 90335
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||| | |||||||||||||| ||||||||| || | |||| |||||||||||||||||||    
T  90271 cacatcttcaaataacacatctttatataacacatttttatatagcacatctttatataacacat 90335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 41137882 - 41137775
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaat 112  Q
    |||| ||||||||| |||||||||||||||||| ||||| |||||||||  |||||| |||| |||          |||||| ||||||  |||||||||    
T  41137882 aatagcacatctttgtataacacatctttaaatcacacaacttcaaataacacatctatata-aac----------cacatcattaaat--cacatcaat 41137796  T
Q  113 ttcacatcatcaaataattca 133  Q
    |||||||||||||||||||||    
T  41137795 ttcacatcatcaaataattca 41137775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 9132314 - 9132265
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatag 62  Q
    |||| |||||||||||||||||||||||||||| | |||| |||||||||    
T  9132314 aataacacatctttatataacacatctttaaatcatacattttcaaatag 9132265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 23633198 - 23633145
Alignment:
Q  29 ataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||| |||||| ||||| |||||| | |||||||||||||||||    
T  23633198 ataacacatctttatataacatatctttaaatagcaaatctttatataacacat 23633145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 52272930 - 52272994
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||| || ||||||||||||||| || ||||||||||||| |  |||||||||||| ||||||    
T  52272930 cacatcgttgtataacacatctttatatcacacatcttcaaacatcacatctttatatgacacat 52272994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 52272973 - 52273029
Alignment:
Q  16 atcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    ||||||||||||||| |||||||||||||| ||||||||| | |||  |||||||||    
T  52272973 atcacatctttatatgacacatctttaaatcacacatctttatataacacatcttta 52273029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 18514723 - 18514680
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaata 61  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||    
T  18514723 cacatctttaaataacacatctttaaatcacacattttcaaata 18514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 23633225 - 23633178
Alignment:
Q  32 acacatctttaaataacacatcttcaaatagtacatctttatataaca 79  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  23633225 acacatctttatataacacatcttcgaataacacatctttatataaca 23633178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 23633224 - 23633187
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatctt 55  Q
    |||||||||||||||||||||||  |||||||||||||    
T  23633224 cacatctttatataacacatcttcgaataacacatctt 23633187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 23633200 - 23633140
Alignment:
Q  12 gaatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    ||||| ||||||||||||||||| ||||||||||| || ||||| | |||  |||||||||    
T  23633200 gaataacacatctttatataacatatctttaaatagcaaatctttatataacacatcttta 23633140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 52272990 - 52273034
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatag 62  Q
    |||||||||| || ||||||||||| |||||||||||| ||||||    
T  52272990 cacatctttaaatcacacatctttatataacacatctttaaatag 52273034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 11150598 - 11150668
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||    
T  11150598 aatatcacatctttatataacacatctttaaatcacacatcttcaaataacacatttttatataacacatt 11150668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 15703750 - 15703808
Alignment:
Q  24 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  15703750 tttatataacacatctttaaatcacacatcttcaaatagcacatctttatataacacat 15703808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 42597313 - 42597243
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    |||| ||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  42597313 aataacacatatttatataacacatctttaaatcatacatcttcaaatagtacatatttatataacacatt 42597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 23973118 - 23973187
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||||||| ||||| |||||||| ||||    
T  23973118 aatatcacatctttatataacacatctttaaatcacacaatttcaaatagcacatcattatataatacat 23973187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 25127160 - 25127107
Alignment:
Q  24 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataa 77  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25127160 tttatataacacatctttaaatcacacatcttcaaataatacatctttatataa 25127107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 15703784 - 15703843
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  15703784 aatagcacatctttatataacacatcttcaaataacacatcttcaaataacacatcttta 15703843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 35462366 - 35462293
Alignment:
Q  93 tcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| ||| | | | ||||||||| |||||||    
T  35462366 tcgttaattaacacatcaattttacatcatcaaataattcacaaattacaataagtcaaataattcatcaatta 35462293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 15242160 - 15242011
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatt 113  Q
    |||||||||| ||||||| ||||||||| |||||| ||||||||  ||||||||| ||| |||  |  |    | | |||| ||||||| ||| ||| ||    
T  15242160 cacatctttaaataacacgtctttaaatcacacattttcaaataacacatctttacataccaccgtcgtcaaatacgcatcattaaatagcacttcagtt 15242061  T
Q  114 tcacatcatcaaataattcacaaatcacacttaattaaataattcctcaa 163  Q
      ||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  15242060 atacatcatcaaataattcacaaattacacttaatcaaataattcatcaa 15242011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 37838624 - 37838560
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  37838624 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 37838560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 42597353 - 42597289
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  42597353 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 42597289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 19612796 - 19612737
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||  |||||||||    
T  19612796 aatatcacatctttatataacacatatttaaatcagacatcttcaaataacacatcttta 19612737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 19612835 - 19612772
Alignment:
Q  20 catctttatat-aacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||| ||||||||||||||| | |||||| ||||||  |||||||||||||||||||    
T  19612835 catctttatatcaacacatctttaaatcatacatctacaaatatcacatctttatataacacat 19612772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 13885361 - 13885253
Alignment:
Q  33 cacatctttaaata---acacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcacatcatcaaataa 129  Q
    ||||||||||||||   ||||||||| ||||   ||||||| | ||| ||||| | ||||  ||| | |||||| ||||||||||||||||||||| |||    
T  13885361 cacatctttaaatagtcacacatctttaaatcacacatcttcaaatagcacatcaatttcttatcatcaaataatacatcaatttcacatcatcaagtaa 13885262  T
Q  130 ttcacaaat 138  Q
    |||||||||    
T  13885261 ttcacaaat 13885253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 14644896 - 14645047
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaa 111  Q
    ||||||||||||||||||  ||||| |||||||| || |||| |||||||  ||||  ||| ||||||| | | || |||||| |||| ||||| |||||    
T  14644896 aatatcacatctttatat--cacatttttaaatagcatcatcgtcaaatacaacattattaaataacacttcaattacacatcattaattaacatatcaa 14644993  T
Q  112 tttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatt 165  Q
    | | |||||||||| ||| ||| | || | ||||||| ||||||||| ||||||    
T  14644994 tgttacatcatcaattaactcatatattatacttaatcaaataattcatcaatt 14645047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 15703814 - 15703883
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| |||||||| | ||||||||||||||||| ||| |||||||||||  |||||||| |||| |||||    
T  15703814 aataacacatcttcaaataacacatctttaaatcacaaatcttcaaataacacatctttgtataccacat 15703883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 9564965 - 9564917
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaata 61  Q
    ||||||||||| ||||||| ||||||||||||| ||||||| |||||||    
T  9564965 aatatcacatccttatatagcacatctttaaatcacacatcctcaaata 9564917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13885366 - 13885308
Alignment:
Q  13 aatatcacatctttatata---acacatctttaaataacacatcttcaaatagtacatc 68  Q
    ||||||||||||||| |||   |||||||||||||| |||||||||||||||| |||||    
T  13885366 aatatcacatctttaaatagtcacacatctttaaatcacacatcttcaaatagcacatc 13885308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 15703774 - 15703838
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||| | ||| |||||||||| ||||||||||||||||||  ||||||| | |||||||||    
T  15703774 cacatcttcaaatagcacatctttatataacacatcttcaaataacacatcttcaaataacacat 15703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 23973091 - 23973142
Alignment:
Q  32 acacatctttaaataaca-catcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||| |||| |||||||  |||||||||||||||||||    
T  23973091 acacatctttaaataacatcatcatcaaatatcacatctttatataacacat 23973142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 18875383 - 18875425
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaat 60  Q
    |||||| |||||||||||||||||| |||||||||| ||||||    
T  18875383 cacatccttatataacacatctttatataacacatcgtcaaat 18875425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 18875348 - 18875417
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||| ||  | ||||||| ||||||| | | |||  |||||||||||||||||||    
T  18875348 aatatcacatctttatatagcatgtatttaaatcacacatccttatataacacatctttatataacacat 18875417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 42145628 - 42145713
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataa 103  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||| ||||||||||| | ||||||    
T  42145628 cacatctttatattacacatctttaaatcacacatattcaaataacacatctttatataacacatcattttcacatcatcaaataa 42145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 9882567 - 9882631
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataa 77  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  9882567 aatattacatctttatataacacatctttaaatcacacatcttcaaatagcacatctttatataa 9882631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 12577132 - 12577197
Alignment:
Q  17 tcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||    
T  12577132 tcacatctttatataacacatctttaaatcacacatcttcaaatagcacatatttatataatacat 12577197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 9882521 - 9882591
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||||||    
T  9882521 aatatcacatctttatataacacatcttcaaatagcatcatcatcaaatattacatctttatataacacat 9882591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 40387802 - 40387865
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatata 76  Q
    |||| |||||||||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  40387802 aatagcacatctttatataactcatctttaaatcacacatcttcaaataacacatctttatata 40387865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 42145598 - 42145750
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattat----tttcacatcgttaaataacacatcaatt 113  Q
    |||||||||| |||||||||||||| || ||||||||| | ||   ||||||||| || ||||||  |    |  |||||| ||| ||||||||||| ||    
T  42145598 cacatctttagataacacatctttacatgacacatctttatattacacatctttaaatcacacatattcaaataacacatctttatataacacatcattt 42145697  T
Q  114 tcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
    |||||||||||||||||||| | || ||||||| | ||||||||| |||||||    
T  42145698 tcacatcatcaaataattcatacattacacttagtcaaataattcatcaatta 42145750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 17289899 - 17289958
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  17289899 aataacacatctttatagaacacatctttaaatcacacatcttcaaacattacatcttta 17289958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 40387764 - 40387822
Alignment:
Q  21 atctttatataacacatctttaaa-taacacatcttcaaatagtacatctttatataac 78  Q
    |||||||||| ||||||||||||| | |||||||||||||||| |||||||||||||||    
T  40387764 atctttatatgacacatctttaaaatcacacatcttcaaatagcacatctttatataac 40387822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 12577173 - 12577221
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaata 61  Q
    |||| ||||| ||||||||| |||||||||||| |||||||||||||||    
T  12577173 aatagcacatatttatataatacatctttaaatcacacatcttcaaata 12577221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12577090 - 12577152
Alignment:
Q  20 catctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||| |||||||||  ||||||| |||| ||||   |||||||||||||||||||    
T  12577090 catctttatatagcacatctttgtataacacgtctttaaatctcacatctttatataacacat 12577152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 12577072 - 12577120
Alignment:
Q  32 acacatctttaaataacacatcttcaaatagtacatctttatataacac 80  Q
    ||||||||||||||||| |||||| | |||| |||||||| ||||||||    
T  12577072 acacatctttaaataactcatctttatatagcacatctttgtataacac 12577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 37379722 - 37379792
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    |||| ||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  37379722 aataacacatatttatataacacatctttaaatcatacatcttcaaatagtacatatttatataacacatt 37379792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 20264614 - 20264547
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||||||||||||  || |||||| |||||||||||||||| |||||||||||||||||||    
T  20264614 aatatcacatctttatataaca--tccttaaatcacacatcttcaaatagcacatctttatataacacat 20264547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 16092602 - 16092671
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||  ||||||||||||| |||||    
T  16092602 aatatcacatttttatataacacatctttaaatcaaacatcttcaaataacacatctttatatagcacat 16092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 27401642 - 27401575
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacac 80  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||  |||| ||||||||||||    
T  27401642 aataacacatctttatatgacacatctttaaatcacacatcttcaaataacacatatttatataacac 27401575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 20264571 - 20264502
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| |||||||||||||||||||||||||||| | | || ||||||||  |||||||||||||||||||    
T  20264571 aatagcacatctttatataacacatctttaaatcataaatattcaaataacacatctttatataacacat 20264502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 37379682 - 37379746
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  37379682 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 37379746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 20179904 - 20179967
Alignment:
Q  18 cacatctttatataacacatctttaaat-aacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  20179904 cacatatttgtataacacatctttatatcaacacatcttcaaata--acatctttatataacacat 20179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 38991898 - 38991940
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaat 60  Q
    |||||||||||||||||||||||||||| |||| |||||||||    
T  38991898 cacatctttatataacacatctttaaatcacacttcttcaaat 38991940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 16092647 - 16092695
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaata 61  Q
    |||| |||||||||||||| |||||| |||||| |||||||||||||||    
T  16092647 aataacacatctttatatagcacatcattaaatcacacatcttcaaata 16092695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 16092561 - 16092626
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttc-aaatagtacatctttatataacacat 82  Q
    |||||||||| |||||||||||||| || ||||||| || |||||  |||| ||||||||||||||    
T  16092561 cacatctttagataacacatctttatatgacacatcatcaaaatatcacatttttatataacacat 16092626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 20264641 - 20264593
Alignment:
Q  32 acacatctttaaataaca-catcttcaaatagtacatctttatataaca 79  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||    
T  20264641 acacatctttaaataacatcatcgtcaaatatcacatctttatataaca 20264593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 27401652 - 27401588
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||| |||||||||||||| || ||||||||| ||||   ||||||| | |||||||||    
T  27401652 cacatctttaaataacacatctttatatgacacatctttaaatcacacatcttcaaataacacat 27401588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 29496858 - 29496789
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||    
T  29496858 aatagcacatctttatataacacatctttaaatcacacaacttcaaatagcacatgtttatataacacat 29496789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 29496903 - 29496834
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  29496903 aataacacatatttatataacacatctttaaatcacacaacttcaaatagcacatctttatataacacat 29496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 29496813 - 29496744
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||||||  |||||| ||||||||||||    
T  29496813 aatagcacatgtttatataacacatctttaaatcacacaacttcaaataacacatctatatataacacat 29496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 29496943 - 29496879
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||  |||| ||||||||||||||    
T  29496943 cacatctttatataacacatctctaaatcacacatctttaaataacacatatttatataacacat 29496879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 39437023 - 39436973
Alignment:
Q  32 acacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  39437023 acacatctttaaataacacatcttcatatggtagatctttatataacacat 39436973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 19076601 - 19076666
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    |||||||||| ||||||| ||||||||| |||||||||||| ||| |||||| |||| ||||||||    
T  19076601 cacatctttaaataacacgtctttaaattacacatcttcaagtagcacatctctatacaacacatt 19076666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 23959916 - 23959861
Alignment:
Q  17 tcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||  ||||||||    
T  23959916 tcacatctttatataacacatttttaaatcatacatcttcaaatagcgcatcttta 23959861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 28711058 - 28711003
Alignment:
Q  64 acatctttatataacacattattttcacatcgttaaataacacatcaatttcacat 119  Q
    ||||| ||| ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  28711058 acatcattaaataacacatcaatttcacatcgttaaacaacacatcaatttcacat 28711003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 29496958 - 29496894
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||| ||||||||||| |||||||||||  ||||   ||||||||| |||||||||    
T  29496958 cacatctttatatgacacatctttatataacacatctctaaatcacacatctttaaataacacat 29496894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 39436977 - 39436927
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatc 68  Q
    ||||||| || || |||||||||||||||||||||| ||||||| ||||||    
T  39436977 cacatctctaaatcacacatctttaaataacacatcgtcaaataatacatc 39436927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 23959935 - 23959878
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctt 70  Q
    ||||||||||||||||||  |||||||||| ||||||||| || ||||  ||||||||    
T  23959935 aatatcacatctttatatgtcacatctttatataacacatttttaaatcatacatctt 23959878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 14048126 - 14048170
Alignment:
Q  24 tttatataacacatctttaaataacacatcttcaaatagtacatc 68  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||    
T  14048126 tttatataacacatctttaaagcacacatcttcacatagcacatc 14048170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 39436989 - 39436949
Alignment:
Q  21 atctttatataacacatctttaaataacacatcttcaaata 61  Q
    ||||||||||||||||||| ||||| ||||||||| |||||    
T  39436989 atctttatataacacatctctaaatcacacatctttaaata 39436949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 106966 - 107081
Alignment:
Q  47 acacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcaca 142  Q
    |||||||||||||||| | || ||||||||||||||  ||    | |||||  | |||||||||||||||||||||||||||||||| |||||||| |||    
T  106966 acacatcttcaaatagcaaatatttatataacacatctttaaaatacacattatcaaataacacatcaatttcacatcatcaaataactcacaaattaca 107065  T
Q  143 cttaattaaataattc 158  Q
    |||| | |||||||||    
T  107066 cttagtcaaataattc 107081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 109063 - 109162
Alignment:
Q  34 acatctttaaataacacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatttcacatcatcaaataa 129  Q
    |||||||||||| |||||||||||||||| | || ||||||||||||||  ||    | |||||  | |||||||||||||||||||||||| |||||||    
T  109063 acatctttaaatcacacatcttcaaatagcaaatatttatataacacatctttaaaatacacattatcaaataacacatcaatttcacatcagcaaataa 109162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 852 - 920
Alignment:
Q  14 atatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||||  ||||||||||| |||||||    
T  852 atatcacatctttatataacacatctttaaatcacacatatgcaaataacacatctttatagaacacat 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 896 - 965
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| |||||||||||| ||||||||||||||| | |||||||||||||  |||| ||||||||||||||    
T  896 aataacacatctttatagaacacatctttaaatcaaacatcttcaaataacacatatttatataacacat 965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 941 - 1010
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||| |||||  |||| ||||||||||||||    
T  941 aataacacatatttatataacacatctttgaatcacacatctttaaataacacatttttatataacacat 1010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 986 - 1041
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatc 68  Q
    |||| ||||| |||||||||||||||||||||| |||||| ||||||||| |||||    
T  986 aataacacatttttatataacacatctttaaatcacacattttcaaatagcacatc 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 9547898 - 9547962
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||||||    
T  9547898 cacatctttatataacacatctttaaatcacacatctacaaataacacgtctttatataacacat 9547962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 19770064 - 19770014
Alignment:
Q  33 cacatctttaaataacacatcttcaaatagtacatctttatataacacatt 83  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  19770064 cacatctttaaattacacatcttcaaataacacatctttatataacacatt 19770014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 27573013 - 27572963
Alignment:
Q  25 ttatataacacatctttaaataacacatcttcaaatagtacatctttatat 75  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  27573013 ttatataacacatctttaaaacacacatcttcaaatagcacatctttatat 27572963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 19891954 - 19892004
Alignment:
Q  32 acacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    |||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  19891954 acacatctttaaatcacacattttcaaataacacatctttatataacacat 19892004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 28708788 - 28708852
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  28708788 cacatgtttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 28708852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 3851989 - 3851927
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatat 75  Q
    |||| |||||||||| |||||||||||||| || ||||||||| | |||| |||||| |||||    
T  3851989 aataacacatctttaaataacacatctttatatgacacatctttatatagcacatctctatat 3851927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 9547883 - 9547925
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaat 60  Q
    |||||||||| |||||||||||||| |||||||||||| ||||    
T  9547883 cacatctttagataacacatctttatataacacatctttaaat 9547925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 19770069 - 19770027
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatctt 55  Q
    ||||||||||||||| || ||||||||| ||||||||||||||    
T  19770069 aatatcacatctttaaattacacatcttcaaataacacatctt 19770027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 27572980 - 27572931
Alignment:
Q  13 aatatcacatctttatat-aacacatctttaaataacacatcttcaaata 61  Q
    |||| ||||||||||||| |||||||||| |||||||||||| |||||||    
T  27572980 aatagcacatctttatatcaacacatcttcaaataacacatcatcaaata 27572931  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 9547938 - 9547978
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatc 53  Q
    |||| ||| |||||||||||||||||||||||| |||||||    
T  9547938 aataacacgtctttatataacacatctttaaatcacacatc 9547978  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 19891724 - 19891768
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatag 62  Q
    |||||||| | ||| ||||||||||||| ||||||||||||||||    
T  19891724 cacatcttaaaatatcacatctttaaattacacatcttcaaatag 19891768  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 19891980 - 19892012
Alignment:
Q  13 aatatcacatctttatataacacatctttaaat 45  Q
    |||| ||||||||||||||||||||||||||||    
T  19891980 aataacacatctttatataacacatctttaaat 19892012  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 22469043 - 22469079
Alignment:
Q  19 acatctttatataacacatctttaaataacacatctt 55  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  22469043 acatctttaaataacacatctttatataacacatctt 22469079  T

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Target: scaffold0498 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 10020 - 10174
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaa 111  Q
    |||| ||||||||||||||||||||||||||||  || |||| || ||| | ||||| ||| | ||||| | | ||  |||||||||| ||||| |||||    
T  10020 aataacacatctttatataacacatctttaaattgcatcatcgtcgaat-gcacatcattaaaaaacacttcagttatacatcgttaattaacatatcaa 10118  T
Q  112 -tttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
     ||| ||||||||||||||||||||||| | |||| || ||||||||| |||||||    
T  10119 attttacatcatcaaataattcacaaattatacttcatcaaataattcatcaatta 10174  T

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Target: scaffold0498; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 9995 - 10044
Alignment:
Q  33 cacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||||||    
T  9995 cacatctttaaatcacacatctttaaataacacatctttatataacacat 10044  T

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Target: scaffold0498; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 9990 - 10049
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 72  Q
    |||| |||||||||| || |||||||||||||||||||||||| | |||  |||||||||    
T  9990 aatagcacatctttaaatcacacatctttaaataacacatctttatataacacatcttta 10049  T

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Target: scaffold0498; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 10010 - 10052
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaat 60  Q
    |||||||||| |||||||||||||| |||||||||||| ||||    
T  10010 cacatctttaaataacacatctttatataacacatctttaaat 10052  T

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Target: scaffold0323 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 15533 - 15588
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatc 68  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  15533 aatatcaaatctttatataacacatctttaaattacacatcttcaaatagcacatc 15588  T

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Target: scaffold0323; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 15583 - 15634
Alignment:
Q  115 cacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 166  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| | |||||||    
T  15583 cacatcatcaaataattcacaaattacatttaatcaaataatccatcaatta 15634  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 172396 - 172245
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaa 111  Q
    ||||||||||||||||||  ||||| |||||||| || |||| |||||||  ||||  ||| ||||||| | | || |||||| |||| ||||| |||||    
T  172396 aatatcacatctttatat--cacatttttaaatagcatcatcgtcaaatacaacattattaaataacacttcaattacacatcattaattaacatatcaa 172299  T
Q  112 tttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatt 165  Q
    | | |||||||||| ||| ||| | || | ||||||| ||||||||| ||||||    
T  172298 tgttacatcatcaattaactcatatattatacttaatcaaataattcatcaatt 172245  T

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Target: scaffold0449 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 284 - 215
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattt 87  Q
    |||||||||||||| |||||||  ||||| |||||||||| |||  |||||| |||||||||||| ||||    
T  284 cacatctttatatagcacatctacaaatatcacatcttcatataacacatctatatataacacatcattt 215  T

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Target: scaffold0449; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 296 - 235
Alignment:
Q  21 atctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||||| |||||||||||||| ||| ||||||| ||||||  ||||||| |||||||||||    
T  296 atctttagataacacatctttatatagcacatctacaaatatcacatcttcatataacacat 235  T

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Target: scaffold0449; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 259 - 219
Alignment:
Q  13 aatatcacatctttatataacacatctttaaataacacatc 53  Q
    ||||||||||||| ||||||||||||| || ||||||||||    
T  259 aatatcacatcttcatataacacatctatatataacacatc 219  T

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Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 22674 - 22711
Alignment:
Q  24 tttatataacacatctttaaataacacatcttcaaata 61  Q
    |||||||||||||||||||||| |||||||||||||||    
T  22674 tttatataacacatctttaaatcacacatcttcaaata 22711  T

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Target: scaffold0679 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 2415 - 2351
Alignment:
Q  18 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 82  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  2415 cacatgtttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 2351  T

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