View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_32 (Length: 251)
Name: NF21215_low_32
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1361347 - 1361583
Alignment:
| Q |
1 |
ctactcaattgattatcacattttatgttaatctctctgcaatttctgttt-ggtcttgtgaagtcttgtattactgtttggtttctcaatgttaaaaat |
99 |
Q |
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| T |
1361347 |
ctactcaattgattatcacattttatgttaatcactctgcaatttctgtttaggtcttgtgaagtcgtgtattactgtttggttactcaatgttaaaaat |
1361446 |
T |
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| Q |
100 |
gttcaagtttgtcaagttttatagataaaatttgaaaatttataattagtaataatcactcaagaaagagcaaagttagcattgatttaacatgctgaca |
199 |
Q |
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| T |
1361447 |
gctcaagtttgtcaagttttatagataaaatttgaaaatttataattagtaataatcactcaatta---gcaaagttagcattgatttaacatgctgaca |
1361543 |
T |
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| Q |
200 |
tcttcatggagaaatgtgaataattacatggaaatatttt |
239 |
Q |
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| T |
1361544 |
tcttcatggagaaatgtgaataattacatggaaatatttt |
1361583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 1350874 - 1351017
Alignment:
| Q |
50 |
ttggtcttgtgaagtct-tgtattactgtttggtttctcaatgttaaaaatgttcaagtttgtcaagttttatagataaaatttgaaaatttataattag |
148 |
Q |
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| T |
1350874 |
ttggtcttgtgaagttggtgtattactgtttggtttcttaatgttaaaaatgctcaagtttgtcaagttttattgataaaatttgaaaattcataattag |
1350973 |
T |
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| Q |
149 |
taataatcactcaagaaagagcaaagttagcattgatttaacatgctg |
196 |
Q |
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| T |
1350974 |
taataatcactc----aagagcgaagtttgcattgatttcacatgctg |
1351017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 1344572 - 1344653
Alignment:
| Q |
71 |
ttactgtttggtttctcaatgttaaaaatgttcaagtttgtcaagttttatagataaaatttgaaaatttataattagtaat |
152 |
Q |
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| T |
1344572 |
ttactatttggtttctcaatgttaaaactaatcaaatttttgaagtcctctagatgtaatttgaaaattcataattagtaat |
1344653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 1354990 - 1354910
Alignment:
| Q |
71 |
ttactgtttggtttctcaatgttaaaaatgttcaagtttgtcaagttttatagataaaatttgaaaatttataattagtaat |
152 |
Q |
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| T |
1354990 |
ttactatttagtttcttaatgttagaa-tgctcaaatttgtgaagttttttagatgtaatttgaaaattcataattagtaat |
1354910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 29051978 - 29051899
Alignment:
| Q |
71 |
ttactgtttggtttctcaatgttaaaaatgttcaagtttgtcaagttttatagataaaatttgaaaatttataattagta |
150 |
Q |
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| T |
29051978 |
ttactatttggtttctcaatgttagaaatgctcaaatttgtgaagttttctatatgtaatttgaaaattcataattagta |
29051899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 13590657 - 13590735
Alignment:
| Q |
71 |
ttactgtttggtttctcaatgttaaaaatgttcaagtttgtcaagttttatagataaaatttgaaaatttataattagt |
149 |
Q |
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| T |
13590657 |
ttactatttggtttctcagtggtaaaaatgctcaaatttgtatagttttatagatgtaatttgaaaattcatgattagt |
13590735 |
T |
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