View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_39 (Length: 245)
Name: NF21215_low_39
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 47876561 - 47876784
Alignment:
| Q |
7 |
tccaagaatattgacctcaaatctaggttccctcaaactagagttaaggaagagtactttcataaaacaaattttagaacacataaaggttcttcgnnnn |
106 |
Q |
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| T |
47876561 |
tccaagaatattgacctcaaatctaggttccctcaaactagagttaaggaagagtactttcataaaacggattttagaacacataaaggttcttcggaaa |
47876660 |
T |
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| Q |
107 |
nnnnn--cacataaaggtcactgtcaaaagtctgttaatacattgcgaattaaaataagataatattttacaagaactgctacatcaattgtatttgagc |
204 |
Q |
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| T |
47876661 |
aaaagaacacataaaggtcaccgtcaaaagtctgttaatacactgcgaattaaaataagataatattttacaagaactgctacatcaattgtatttgagc |
47876760 |
T |
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| Q |
205 |
cttcgggcactgagggagcttatt |
228 |
Q |
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|||| ||||||||||||||||||| |
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| T |
47876761 |
cttcaggcactgagggagcttatt |
47876784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 10208155 - 10208102
Alignment:
| Q |
161 |
aagataatattttacaagaactgctacatcaattgtatttgagccttcgggcac |
214 |
Q |
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|||||| |||||||||||| |||||||||||| || |||||||||||| ||||| |
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| T |
10208155 |
aagatagtattttacaagagctgctacatcaactggatttgagccttctggcac |
10208102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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