View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_4 (Length: 559)
Name: NF21215_low_4
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 542
Target Start/End: Complemental strand, 52804302 - 52803775
Alignment:
| Q |
14 |
atatttcaagagtgtcgtaatcgaatcatgtttttcaggatatgtttgatttcttgtcaaattctcgttgatctcttctttgaatgatgtactaatccaa |
113 |
Q |
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| T |
52804302 |
atatttcaagagtgtcgtaatcgaatcatgtttttcaggatatgtttgatttcttgtcaaattctcgttgatctcttctttgaatgatgtactaatccaa |
52804203 |
T |
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| Q |
114 |
gaccaagagattattgtattgcctataaggagtaatgttgttctatggactagagtgcctcttataatctctttaatatataatttaccttnnnnnnnta |
213 |
Q |
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| T |
52804202 |
gaccaagagattattgtattgcctataaggactaatgttgttctatggactagagtgcctcttataatctctttaatatataatttaccttaaaaaa-ta |
52804104 |
T |
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| Q |
214 |
tatataatcaactaaatattttcaaaaataacaagacaaaagtaagacattgagctggtttagaaaatccaacattaatgttaattctaaattactgtta |
313 |
Q |
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| T |
52804103 |
tatataatcaactaaatattttcaaaaataacaagacaaaagtaagacattcagctggtttagaaaatccaacattaatgttaattctaaattactgtta |
52804004 |
T |
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| Q |
314 |
aacaacatcatggtaattgctaagcatgctcaacactcaacaaaagcatacatcacatcgtatcatatcatatctctggagtacagttaacatttaatga |
413 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52804003 |
aacaacatcatggtaattgctaagcatcctcaacactcaacaaaagcatacatcacatcgtatcatatcatatctctggagtacggttaacatttaatga |
52803904 |
T |
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| Q |
414 |
tcagttatgatttaaatcatacattacattacatgcgttttgatcgaagatatttaagatgatcatgtttatataaagatacatacaattaactgaaaac |
513 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52803903 |
tcagttatgatttaaatcatacattacattacatgcattttgatcgaagatatttaagatgatcatgtttatataaagatacatacaattaactgaaaac |
52803804 |
T |
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| Q |
514 |
agaatgagattgagtgcacagccatatat |
542 |
Q |
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| T |
52803803 |
agaatgagattgagtgcatagccatatat |
52803775 |
T |
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