View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21215_low_41 (Length: 232)

Name: NF21215_low_41
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21215_low_41
NF21215_low_41
[»] chr2 (3 HSPs)
chr2 (1-221)||(2381181-2381394)
chr2 (1-54)||(23748289-23748342)
chr2 (4-53)||(41778771-41778820)
[»] chr8 (4 HSPs)
chr8 (50-120)||(40200481-40200548)
chr8 (1-54)||(8815335-8815388)
chr8 (18-55)||(9434510-9434547)
chr8 (1-53)||(1027042-1027094)
[»] chr7 (3 HSPs)
chr7 (1-53)||(37925839-37925891)
chr7 (4-54)||(39856062-39856112)
chr7 (11-51)||(25887192-25887232)
[»] chr4 (7 HSPs)
chr4 (2-54)||(7977692-7977744)
chr4 (1-53)||(49735466-49735518)
chr4 (10-54)||(54320432-54320476)
chr4 (2-53)||(56135747-56135798)
chr4 (8-54)||(1968560-1968606)
chr4 (21-55)||(21695102-21695136)
chr4 (11-55)||(54935063-54935107)
[»] scaffold0067 (1 HSPs)
scaffold0067 (4-55)||(39387-39438)
[»] chr6 (3 HSPs)
chr6 (1-48)||(4097707-4097754)
chr6 (1-55)||(30487302-30487356)
chr6 (4-53)||(14515471-14515520)
[»] chr3 (2 HSPs)
chr3 (11-53)||(24253719-24253761)
chr3 (1-45)||(10943808-10943852)
[»] chr5 (3 HSPs)
chr5 (4-53)||(13634709-13634758)
chr5 (11-55)||(20147074-20147118)
chr5 (1-49)||(34980812-34980860)
[»] chr1 (3 HSPs)
chr1 (6-54)||(12234007-12234055)
chr1 (4-56)||(35349659-35349711)
chr1 (1-53)||(51303382-51303434)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2381181 - 2381394
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacacccttaataacattgaggtaattaagaagagatttgagtttttaaaggttgtc 100  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381181 gtgaactctcccctcccattccctcataaacccacaatccaaatacacccttaataacattgaggtaattaagaagagatttgagtttttaaaggttgtc 2381280  T
Q  101 attggaatcatgaatgcccacgtttgatacgttcaacatatatatgacattcccgtatatgactaaacactaaagaacaacatgtgagttggaaatttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| || |||||    
T  2381281 attggaatcatgaatgcccacgtttgatacgttcaacatatatatgacattcccgtatat-------aactaaagaacaacatgtgagttgtaagtttag 2381373  T
Q  201 tgagagtctaaacatgttatt 221  Q
    |||||||||||||| ||||||    
T  2381374 tgagagtctaaacacgttatt 2381394  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23748289 - 23748342
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacacccttaa 54  Q
    ||||||||| ||||||| | ||||| ||||||| | ||||||||||||||||||    
T  23748289 gtgaaccctcccctcccttcccctcctaaaccctccatccaaacacacccttaa 23748342  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 41778820 - 41778771
Alignment:
Q  4 aacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    |||||| ||||||| ||||||  ||||||| |||||||||||||||||||    
T  41778820 aaccctcccctccctttcccttctaaaccctcaatccaaacacaccctta 41778771  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 40200481 - 40200548
Alignment:
Q  50 cttaataacattgaggtaattaagaagagatttgagtttttaaaggttgtcattggaatcatgaatgccca 120  Q
    ||||||||||||||||| |   |||||||||||||||||||| ||||||||| |||||| ||| |||||||    
T  40200481 cttaataacattgaggtca---agaagagatttgagtttttagaggttgtcactggaattatggatgccca 40200548  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8815335 - 8815388
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacacccttaa 54  Q
    ||||||||| |||||||   ||||| ||||||| ||||||||||||||||||||    
T  8815335 gtgaaccctcccctccctccccctcctaaaccctcaatccaaacacacccttaa 8815388  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 9434510 - 9434547
Alignment:
Q  18 attccctcataaacccacaatccaaacacacccttaat 55  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  9434510 attccctcgtaaaccctcaatccaaacacacccttaat 9434547  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1027042 - 1027094
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    ||||||||||||||||| | || || |||||||  ||||||||||||||||||    
T  1027042 gtgaacccttccctcccttcccttcctaaacccttaatccaaacacaccctta 1027094  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37925891 - 37925839
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    ||||||||| ||||||| | ||||| ||||||| |||||||||||||||||||    
T  37925891 gtgaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccctta 37925839  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 39856062 - 39856112
Alignment:
Q  4 aacccttccctcccattccctcataaacccacaatccaaacacacccttaa 54  Q
    |||||| ||||||| | ||||| ||||||| ||||||||||||||||||||    
T  39856062 aaccctcccctcccttcccctcctaaaccctcaatccaaacacacccttaa 39856112  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 25887232 - 25887192
Alignment:
Q  11 ccctcccattccctcataaacccacaatccaaacacaccct 51  Q
    ||||||| | ||||||||||||| |||||||||||||||||    
T  25887232 ccctcccttcccctcataaaccctcaatccaaacacaccct 25887192  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 7977692 - 7977744
Alignment:
Q  2 tgaacccttccctcccattccctcataaacccacaatccaaacacacccttaa 54  Q
    |||||||| ||||||  | ||||||||||||| ||||||||||||||||||||    
T  7977692 tgaaccctcccctcctttcccctcataaaccctcaatccaaacacacccttaa 7977744  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49735518 - 49735466
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    ||||||||| ||||||| | ||||| ||||||| |||||||||||||||||||    
T  49735518 gtgaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccctta 49735466  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 54320476 - 54320432
Alignment:
Q  10 tccctcccattccctcataaacccacaatccaaacacacccttaa 54  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  54320476 tccctccctttccctcctaaaccctcaatccaaacacacccttaa 54320432  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 56135798 - 56135747
Alignment:
Q  2 tgaacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    |||||||| ||||||| | ||||| ||||||| |||||||||||||||||||    
T  56135798 tgaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccctta 56135747  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 1968560 - 1968606
Alignment:
Q  8 cttccctcccattccctcataaacccacaatccaaacacacccttaa 54  Q
    |||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  1968560 cttccctcccttcccctcctaaaccctcaatccaaacacacccttaa 1968606  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 21695102 - 21695136
Alignment:
Q  21 ccctcataaacccacaatccaaacacacccttaat 55  Q
    ||||||||||||| |||||||||||||||||||||    
T  21695102 ccctcataaacccccaatccaaacacacccttaat 21695136  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 54935107 - 54935063
Alignment:
Q  11 ccctcccattccctcataaacccacaatccaaacacacccttaat 55  Q
    ||||||| | ||||| ||||||| |||||||||||||||||||||    
T  54935107 ccctcccttcccctcctaaaccctcaatccaaacacacccttaat 54935063  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 39387 - 39438
Alignment:
Q  4 aacccttccctcccattccctcataaacccacaatccaaacacacccttaat 55  Q
    |||||| ||||||| ||||||  ||||||| |||||||||||||||||||||    
T  39387 aaccctcccctccctttcccttctaaaccctcaatccaaacacacccttaat 39438  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4097707 - 4097754
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacac 48  Q
    ||||||||||||||||| | ||||| ||||||| ||||||||||||||    
T  4097707 gtgaacccttccctcccttcccctcttaaaccctcaatccaaacacac 4097754  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30487356 - 30487302
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacacccttaat 55  Q
    ||||||||| ||||||| | ||||| ||||||| | |||||||||||||||||||    
T  30487356 gtgaaccctcccctcccttcccctcctaaaccctccatccaaacacacccttaat 30487302  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 14515520 - 14515471
Alignment:
Q  4 aacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    |||||| ||||||| | ||||| ||||||| |||||||||||||||||||    
T  14515520 aaccctcccctcccttcccctcctaaaccctcaatccaaacacaccctta 14515471  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 24253761 - 24253719
Alignment:
Q  11 ccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||    
T  24253761 ccctccctttccctcctaaaccctcaatccaaacacaccctta 24253719  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10943808 - 10943852
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaaca 45  Q
    ||||||||| ||||| | ||||||||||||||| |||||||||||    
T  10943808 gtgaaccctcccctctctttccctcataaaccctcaatccaaaca 10943852  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 13634758 - 13634709
Alignment:
Q  4 aacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    |||||| ||||||| | ||||| ||||||| |||||||||||||||||||    
T  13634758 aaccctcccctcccttcccctcctaaaccctcaatccaaacacaccctta 13634709  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 20147074 - 20147118
Alignment:
Q  11 ccctcccattccctcataaacccacaatccaaacacacccttaat 55  Q
    ||||||| | ||||| ||||||| |||||||||||||||||||||    
T  20147074 ccctcccttcccctcctaaaccctcaatccaaacacacccttaat 20147118  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34980860 - 34980812
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacacc 49  Q
    ||||||||||||||||| | ||||| ||||||  |||||||||||||||    
T  34980860 gtgaacccttccctcccttcccctcctaaaccttcaatccaaacacacc 34980812  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 12234055 - 12234007
Alignment:
Q  6 cccttccctcccattccctcataaacccacaatccaaacacacccttaa 54  Q
    |||| ||||||| | ||||| ||||||| ||||||||||||||||||||    
T  12234055 ccctaccctcccttcccctcctaaaccctcaatccaaacacacccttaa 12234007  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 35349659 - 35349711
Alignment:
Q  4 aacccttccctcccattccctcataaacccacaatccaaacacacccttaata 56  Q
    |||||| ||||||| | |||||||||||||  |||||||||||||||| ||||    
T  35349659 aaccctcccctcccttcccctcataaacccttaatccaaacacaccctaaata 35349711  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 51303434 - 51303382
Alignment:
Q  1 gtgaacccttccctcccattccctcataaacccacaatccaaacacaccctta 53  Q
    |||| |||| ||||||| | ||||| ||||||| |||||||||||||||||||    
T  51303434 gtgagccctcccctcccctcccctcctaaaccctcaatccaaacacaccctta 51303382  T

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