View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21215_low_42 (Length: 227)

Name: NF21215_low_42
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21215_low_42
NF21215_low_42
[»] chr2 (12 HSPs)
chr2 (1-227)||(2380784-2381010)
chr2 (45-227)||(11031543-11031725)
chr2 (116-227)||(3044166-3044277)
chr2 (43-227)||(6764183-6764367)
chr2 (39-227)||(7901127-7901309)
chr2 (43-227)||(12410550-12410734)
chr2 (43-227)||(12422610-12422794)
chr2 (43-214)||(37647728-37647899)
chr2 (34-140)||(29739857-29739963)
chr2 (129-227)||(34394644-34394742)
chr2 (58-227)||(27271426-27271586)
chr2 (182-224)||(29739969-29740011)
[»] chr8 (11 HSPs)
chr8 (34-227)||(9932259-9932452)
chr8 (55-227)||(25582744-25582916)
chr8 (34-227)||(13781007-13781199)
chr8 (45-227)||(4034454-4034636)
chr8 (45-227)||(13089940-13090122)
chr8 (55-227)||(45540090-45540262)
chr8 (43-210)||(8444430-8444597)
chr8 (43-212)||(24503817-24503986)
chr8 (184-225)||(10230270-10230311)
chr8 (48-214)||(33574275-33574441)
chr8 (142-214)||(45103902-45103974)
[»] chr1 (16 HSPs)
chr1 (34-227)||(20505389-20505582)
chr1 (34-227)||(26676643-26676836)
chr1 (34-227)||(33676659-33676852)
chr1 (36-227)||(46731815-46732006)
chr1 (65-227)||(28756641-28756803)
chr1 (36-227)||(31911711-31911902)
chr1 (55-227)||(19228052-19228224)
chr1 (45-227)||(34549116-34549298)
chr1 (55-227)||(33936202-33936374)
chr1 (36-225)||(27007552-27007741)
chr1 (55-214)||(4532253-4532412)
chr1 (136-227)||(52022615-52022706)
chr1 (121-211)||(51534647-51534737)
chr1 (37-172)||(15759708-15759843)
chr1 (126-212)||(42966868-42966954)
chr1 (144-177)||(36016714-36016747)
[»] chr3 (5 HSPs)
chr3 (36-227)||(10436594-10436785)
chr3 (34-227)||(20406123-20406316)
chr3 (35-227)||(15029826-15030018)
chr3 (57-172)||(53459125-53459240)
chr3 (124-219)||(20692249-20692344)
[»] chr5 (7 HSPs)
chr5 (37-227)||(26369098-26369288)
chr5 (37-227)||(22580554-22580747)
chr5 (43-227)||(19021153-19021337)
chr5 (43-227)||(22639322-22639506)
chr5 (36-227)||(40973434-40973625)
chr5 (124-227)||(25982341-25982444)
chr5 (181-227)||(6536978-6537024)
[»] chr4 (15 HSPs)
chr4 (34-227)||(47590618-47590811)
chr4 (34-227)||(48640478-48640671)
chr4 (35-227)||(56024790-56024982)
chr4 (36-227)||(40850560-40850751)
chr4 (45-227)||(37870811-37870993)
chr4 (43-227)||(36651894-36652078)
chr4 (43-227)||(43499060-43499244)
chr4 (43-227)||(9896659-9896843)
chr4 (43-227)||(42718333-42718517)
chr4 (43-227)||(7743335-7743519)
chr4 (55-227)||(39059874-39060046)
chr4 (63-150)||(23106851-23106938)
chr4 (36-172)||(40346001-40346137)
chr4 (36-172)||(50771555-50771691)
chr4 (36-227)||(30598393-30598584)
[»] chr7 (14 HSPs)
chr7 (34-219)||(40858191-40858376)
chr7 (45-227)||(40871467-40871649)
chr7 (45-227)||(17194045-17194226)
chr7 (43-227)||(1031987-1032171)
chr7 (55-210)||(9942772-9942927)
chr7 (99-227)||(12623069-12623197)
chr7 (127-204)||(8123965-8124042)
chr7 (36-227)||(32575219-32575410)
chr7 (36-227)||(18299608-18299799)
chr7 (48-227)||(19323986-19324165)
chr7 (36-227)||(38141989-38142180)
chr7 (37-227)||(15669442-15669632)
chr7 (62-227)||(29126018-29126183)
chr7 (124-196)||(41767942-41768014)
[»] chr6 (9 HSPs)
chr6 (38-227)||(6029078-6029267)
chr6 (34-219)||(18972781-18972967)
chr6 (34-227)||(24393658-24393851)
chr6 (45-227)||(12912413-12912595)
chr6 (36-227)||(7093672-7093863)
chr6 (62-175)||(30987217-30987330)
chr6 (124-214)||(8753092-8753182)
chr6 (133-189)||(12250923-12250979)
chr6 (48-108)||(32737327-32737387)
[»] scaffold0074 (1 HSPs)
scaffold0074 (34-227)||(23541-23735)
[»] scaffold0041 (1 HSPs)
scaffold0041 (45-227)||(94633-94815)
[»] scaffold0300 (1 HSPs)
scaffold0300 (43-227)||(9340-9524)
[»] scaffold0432 (1 HSPs)
scaffold0432 (36-227)||(8850-9041)
[»] scaffold0020 (1 HSPs)
scaffold0020 (183-227)||(124353-124397)
[»] scaffold0037 (1 HSPs)
scaffold0037 (182-219)||(867-904)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2381010 - 2380784
Alignment:
Q  1 ctctatccaaacacatcctaagagaaacaacaaccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2381010 ctctatccaaacacatcctaagagaaacaacaatcgcttttcattttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcagacttt 2380911  T
Q  101 tcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctac 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||| ||||||||||||    
T  2380910 tcaccaaacagaagcttcaattaatcaattgctagataaagttaaacttcaattttactggtggctgaaagcaaatcgtcctagtttcgttttctcctac 2380811  T
Q  201 cattcttggtggttaaatcttttacct 227  Q
    ||||||||||| ||||||| |||||||    
T  2380810 cattcttggtgtttaaatcctttacct 2380784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 11031543 - 11031725
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||| |||| ||||||||||||||||| |||||||||||||||| |   |||||||||| |||||||||  |||||||||||||||||||||| |    
T  11031543 cttatttggctatcatgtgtgtgggtgatttgacttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 11031642  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||| |||||||| |||| |||||||    
T  11031643 agcttcaatcttactggtggctgaaggcaaatcgtcctaattttgttttctcctaccattcatggtggttgaatcatttacct 11031725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 3044166 - 3044277
Alignment:
Q  116 ttcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggtta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||    
T  3044166 ttcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggtta 3044265  T
Q  216 aatcttttacct 227  Q
    |||| |||||||    
T  3044266 aatcctttacct 3044277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 6764183 - 6764367
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  6764183 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 6764282  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||| ||||||||||||||||| || |  | |||||||||||||||||||||||| |||||||| || | |||||||    
T  6764283 taagcttcaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttacct 6764367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 7901309 - 7901127
Alignment:
Q  39 tttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagata 138  Q
    |||||||||||||||||||||||||||||| |||          ||||||||||| || ||||||||||||||||||||| |||||||||||| ||||||    
T  7901309 tttcatcttatatggttatcttgtgtgtggatga----------aaggaatgctcgggtttttcaccaaacagaagcttcaattaatcaattgttagata 7901220  T
Q  139 aagttaagc----ttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||    |||||||||||||||||||||||||||||| || |||||||||||||||||| ||||  ||||||||||||  |||||||    
T  7901219 aagttaagcaagcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctatcatttatggtggttaaattctttacct 7901127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 12410550 - 12410734
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  12410550 atcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 12410649  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||| ||||||||||||||||| || |  | |||||||||||||||||||||||| |||||||| || | |||||||    
T  12410650 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttacct 12410734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 12422610 - 12422794
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  12422610 atcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 12422709  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||| ||||||||||||||||| || |  | |||||||||||||||||||||||| |||||||| || | |||||||    
T  12422710 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttacct 12422794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 37647728 - 37647899
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| |||| |||||||||||||| ||||||||||| |||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  37647728 atcttatttggctatcctgtgtgtgggtgatctggcttgaaagaaatgctcgtatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 37647827  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggtt 214  Q
    |||||| ||||| ||||||||||||||||| || |  | |||||||||||||||||||||||| ||||||||    
T  37647828 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggtt 37647899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 29739857 - 29739963
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||      
T  29739857 ccgcttttcatcttatatggttattttgtgtgtgagtgatttggcttgaaaggaatgctcgggtttttcaccaaacaaaagcttcgattaatcaattgac 29739956  T
Q  134 agataaa 140  Q
    |||||||    
T  29739957 agataaa 29739963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 34394742 - 34394644
Alignment:
Q  129 ttgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||| |||||||||||||||||  ||| |||| ||||||| || |||||||||||||||||||||||| ||  |||| ||||||||||||    
T  34394742 ttgctagataaagataagcttcaatcttactattggttgaaggcaaatcgtcctagttttgttttctcctaccattcgtgaaggttgaatcttttacct 34394644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 27271426 - 27271586
Alignment:
Q  58 cttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatctta 157  Q
    ||||||||||||||||||||||| |||| |||||||     |||||||||| |||||||||  ||||||||||| ||         ||||| ||||  ||    
T  27271426 cttgtgtgtgggtgatttggcttaaaagaaatgctcgaatatttcaccaaaaagaagcttcttttaatcaattgtta---------aagctccaattata 27271516  T
Q  158 ctggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||| | || | || |||||||||||||||||||| ||| |||||||| || | |||||||    
T  27271517 ctggtggctgaaaacgaaccgtcctagttttgttttctcctacctttcatggtggttgaaccctttacct 27271586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 29739969 - 29740011
Alignment:
Q  182 tagttttgttttctcctaccattcttggtggttaaatctttta 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  29739969 tagttttgttttctcctatcattcttggtggttaaatctttta 29740011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 9932452 - 9932259
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  9932452 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgct 9932353  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  9932352 agataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttacct 9932259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 25582916 - 25582744
Alignment:
Q  55 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 154  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25582916 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 25582817  T
Q  155 ttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  25582816 ttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttacct 25582744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 13781199 - 13781007
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||||| | ||||| |    
T  13781199 ccgcttttcatcttatatggttatcttgtgtgtggatgatttggcttgaaaggaatgctcgggtttttcaccaaatagaagcttcgattacttaattgtt 13781100  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    | |||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||    
T  13781099 aaataaagttaagcttcaatcttact-gtggctgaaagcaaatcgtcctaattttgttttctcctaccattcttggtggttaaatcctttacct 13781007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 4034636 - 4034454
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||| ||||   |||||||||| |||||||||  ||||||||||||| |||||||| |    
T  4034636 cttatttggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcagatctttcaccaaaaagaagcttcttttaatcaattgctggataaagtca 4034537  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  4034536 agcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttacct 4034454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 13090122 - 13089940
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||| || |   |||||||||| |||||||||  |||||||||||||||||||||| |    
T  13090122 cttatttggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 13090023  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||  |||||||| |||| |||||||    
T  13090022 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccatttatggtggttgaatcctttacct 13089940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 45540090 - 45540262
Alignment:
Q  55 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 154  Q
    ||||||||||||||||||| | |||||||||||||||||   | |||||||||| |||||||||  ||||||||||| ||||||||||||| ||||||||    
T  45540090 tatcttgtgtgtgggtgatctagcttgaaaggaatgctcgaacatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaaacttcaatc 45540189  T
Q  155 ttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
     ||||||||||||||||| || |  |||||||||||||||||||||||||| |||||||| || | |||||||    
T  45540190 atactggtggctgaaagcgaaccgccttagttttgttttctcctaccattcatggtggttgaaccctttacct 45540262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 8444597 - 8444430
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| || ||||||||||||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  8444597 atcttatttggctatcttgtgtgtgggtgatctgccttgaaaggaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 8444498  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggt 210  Q
    |||||| ||||| ||||||||||||||||| ||||  | ||||||||||||||| |||||||| ||||    
T  8444497 taagctccaatcatactggtggctgaaagcgaatcgacctagttttgttttctcttaccattcatggt 8444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 24503817 - 24503986
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| |||||||||||||||||||||| |||||||| |||| ||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  24503817 atcttatttggctatcttgtgtgtgggtgatttgtcttgaaagtaatgttcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 24503916  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtgg 212  Q
    |||||| ||||| ||||||||| ||||||| || |  | |||||||||||||||||||||||| ||||||    
T  24503917 taagctccaatcatactggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtgg 24503986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 10230311 - 10230270
Alignment:
Q  184 gttttgttttctcctaccattcttggtggttaaatcttttac 225  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  10230311 gttttgttttctcctaccattcatggtggttaaatcatttac 10230270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 33574441 - 33574275
Alignment:
Q  48 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaag-cttcgattaatcaattgctagataaagttaag 146  Q
    |||||| | |||||| | |||||||| ||| | ||||| || |||||||| ||| |||||| ||||| || |  || ||||||| || || ||| ||||     
T  33574441 atatggctttcttgtatttgggtgatctggatcgaaagaaacgctcaggcctttaaccaaa-agaaggctactcttgatcaattactcgacaaaattaaa 33574343  T
Q  147 cttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggtt 214  Q
    |||||||||| ||||||| ||||||| |||| || ||| ||||||||||| || |||| || ||||||    
T  33574342 cttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcattttttgtggtt 33574275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 45103974 - 45103902
Alignment:
Q  142 ttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggtt 214  Q
    |||| |||||||||| ||| ||| ||||||| |||| || ||| ||||||||||| || |||| |||||||||    
T  45103974 ttaaacttcaatctttctgatggttgaaagcgaatcgtcatagctttgttttctcttatcatttttggtggtt 45103902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 20505389 - 20505582
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  20505389 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgct 20505488  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  20505489 agataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttacct 20505582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 26676643 - 26676836
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  26676643 ccgcttttcatctaatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgct 26676742  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  26676743 agataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttacct 26676836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 33676852 - 33676659
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  33676852 ccgcttttcatcttatatggttatcttgtgtgtgagtgatttggcttgaaaggaatgctcaggtttttcaccaaacagaagtttcgattaatcaattgct 33676753  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  33676752 agataaagttaagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttacct 33676659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 46731815 - 46732006
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||||||| ||||||||||||||||||||||||    
T  46731815 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaataatcgggtttttcaccaaacaaaagcttcgattaatcaattgctag 46731914  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||| |||||| ||||||||||||| || || |||||||||||||||||||| |||||||||||||| |||||||    
T  46731915 ataaagttaagcttcaatcttgctggtgactgaaagcaaatcgtcctaattttgttttctcctaccatttttggtggttaaatcctttacct 46732006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 28756803 - 28756641
Alignment:
Q  65 gtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactggtgg 164  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28756803 gtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgttagataaagttaagcttcaatcttactggtgg 28756704  T
Q  165 ctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  28756703 ctgaaagcaaatcatcctagttttgttttctcctaccattcttggtggttaaatcctttacct 28756641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 31911902 - 31911711
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| ||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||   |||||||||| ||||| |||| |||||||||||||||    
T  31911902 gcttttaatcttatttggctatcttgtgtatgggtgatttgacttgaaaggaatgctcagatctttcaccaaaaagaagtttcgtttaatcaattgctag 31911803  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||||||| |||||||||||  |||| || |||||||||||||||||||||||| |||||||| | || |||||||    
T  31911802 ataaagttaagcttcaatcttactagtggctgaaagtgaatcgtcatagttttgttttctcctaccattcgtggtggttgagtcatttacct 31911711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 19228224 - 19228052
Alignment:
Q  55 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 154  Q
    |||| |||||||||||||||||||||||||||||||||| |   |||||||||| |||||||||  |||||||||||||||||||||| |||||||||||    
T  19228224 tatcatgtgtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatc 19228125  T
Q  155 ttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||  |||||||||| | ||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  19228124 ttatcggtggctgaaggtaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttacct 19228052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 34549116 - 34549298
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggct-tttcaccaaacagaagcttcgattaatcaattgctagataaagtt 143  Q
    ||||| ||| |||| |||||||||||||| |||||||||||||||| | ||| | ||| |||||| |||||||||  ||||||||||||||||||||||     
T  34549116 cttatttggctatcatgtgtgtgggtgatatggcttgaaaggaatgat-aggatctttaaccaaaaagaagcttcttttaatcaattgctagataaagtc 34549214  T
Q  144 aagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  34549215 aagcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttacct 34549298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 33936202 - 33936374
Alignment:
Q  55 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 154  Q
    ||||||||||||||||||||||||||||||||||||||| |   ||||||||||  |||| |||| |||||||||||||| |||||||||||||||||||    
T  33936202 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaatgaagattcgtttaatcaattgctaaataaagttaagcttcaatc 33936301  T
Q  155 ttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| |  |||||||| |||| || ||||||||||||||| |||||||| |||||||  |||| |||||||    
T  33936302 ttactgataactgaaagcgaatcgtcatagttttgttttctcttaccattcgtggtggtcgaatcctttacct 33936374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 225
Target Start/End: Complemental strand, 27007741 - 27007552
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| | ||||||||  |||||||||||||||||||||||||||||| ||||| || ||  |||||||||| |||| ||||| |||||||||||||||    
T  27007741 gcttttaaacttatatgactatcttgtgtgtgggtgatttggcttgaaatgaatgttcgggtctttcaccaaaaagaatcttcgtttaatcaattgctag 27007642  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttac 225  Q
    ||| ||||||  ||||||| || |||| ||||||||| |||  |  |||||||||||||||||||||||| |||||||| |||| |||||    
T  27007641 atagagttaaatttcaatcatattggtagctgaaagcgaatttttctagttttgttttctcctaccattcgtggtggttgaatcctttac 27007552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 4532412 - 4532253
Alignment:
Q  55 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 154  Q
    ||||||||||||||||||| || ||||||||||||||||     |||||||||| |||| ||||  ||||||||||| |||||||||||||||  |||||    
T  4532412 tatcttgtgtgtgggtgatctgacttgaaaggaatgctcgcatatttcaccaaaaagaaacttcttttaatcaattgttagataaagttaagcaccaatc 4532313  T
Q  155 ttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggtt 214  Q
     ||||||||||||||||| || |  | |||||||||||||||||||||||| ||||||||    
T  4532312 atactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggtt 4532253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 52022615 - 52022706
Alignment:
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||||||||  ||| |||||| |||  || |||||||||||||||||| ||||| |||||||| |||| |||||||    
T  52022615 ataaagttaagcttcaatcttactgacggccgaaagcgaattgtcctagttttgttttctcctatcattcatggtggttgaatcctttacct 52022706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 51534737 - 51534647
Alignment:
Q  121 ttaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtg 211  Q
    ||||||||||| |||||||||||||||| ||||| || |||||||||||||| || |  | |||||||| ||||||||||||||| |||||    
T  51534737 ttaatcaattgttagataaagttaagctccaatcatattggtggctgaaagcgaaccgacctagttttggtttctcctaccattcatggtg 51534647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 15759708 - 15759843
Alignment:
Q  37 cttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctaga 136  Q
    ||||| |||| |||||| | |||||||||| |||||||||| | ||||| ||  ||| ||  ||||| |||| ||| |  ||| | |||||||| |||||    
T  15759708 cttttaatctcatatggctttcttgtgtgtaggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggtctcgttcaatcaattactaga 15759807  T
Q  137 taaagttaagcttcaatcttactggtggctgaaagc 172  Q
    |||| |||| |||||||| |||||||||||||||||    
T  15759808 taaaattaaacttcaatcatactggtggctgaaagc 15759843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 42966954 - 42966868
Alignment:
Q  126 caattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtgg 212  Q
    ||||| || |||||| |||||||||||||||| |  ||||| |||||||||||||  | ||||||||| || || |||| |||||||    
T  42966954 caattacttgataaaattaagcttcaatcttattaatggctaaaagcaaatcatccaaattttgttttttcttaacatttttggtgg 42966868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 36016714 - 36016747
Alignment:
Q  144 aagcttcaatcttactggtggctgaaagcaaatc 177  Q
    |||||||||||||| |||||||||||||||||||    
T  36016714 aagcttcaatcttaatggtggctgaaagcaaatc 36016747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 10436785 - 10436594
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  10436785 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctag 10436686  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  10436685 ataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttacct 10436594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 20406123 - 20406316
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||||| ||||||||    
T  20406123 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttgacttgaaaggaatgctcggatttttcaccaaacagaagcttcgattaagcaattgct 20406222  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  20406223 agataaagttaagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaaatcttttacct 20406316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 15029826 - 15030018
Alignment:
Q  35 cgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgcta 134  Q
    ||||||| |||||||| ||||||||| || |||||||||||||||||||| |||||||  || ||||||||||||| |||||||||||||||||||||||    
T  15029826 cgcttttaatcttataaggttatcttatgcgtgggtgatttggcttgaaatgaatgcttgggtttttcaccaaacaaaagcttcgattaatcaattgcta 15029925  T
Q  135 gataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  15029926 gataaagttaagcttcaatcttattggtggttgaaagcgaatcatcatagttttggtttctcctaccatacatggtggttaaatcttttacct 15030018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 53459240 - 53459125
Alignment:
Q  57 tcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatctt 156  Q
    ||||||||||||||||||||| | ||||| ||  ||| ||  ||||| |||| ||| || ||| | |||||||| ||||||||| |||| |||||||| |    
T  53459240 tcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatcat 53459141  T
Q  157 actggtggctgaaagc 172  Q
    ||||||||||||||||    
T  53459140 actggtggctgaaagc 53459125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 20692344 - 20692249
Alignment:
Q  124 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatc 219  Q
    ||||||| || || ||| |||| |||||||||||||||||||||||| | |||| || ||   |||||||||| || |||| |||||||| |||||    
T  20692344 atcaattactcgacaaaattaaccttcaatcttactggtggctgaaaacgaatcgtcctaaccttgttttctcttatcatttttggtggtcaaatc 20692249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 26369288 - 26369098
Alignment:
Q  37 cttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctaga 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  26369288 cttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctaga 26369189  T
Q  137 taaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||||||||    
T  26369188 taaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctactattcttggtggttaaatcttttacct 26369098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 22580747 - 22580554
Alignment:
Q  37 cttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctaga 136  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| || ||  ||||| |||| | || ||||| ||||||||||||||||    
T  22580747 cttttaatcttatatggctatcttgtgtgcgggtgatttggcttgaaaggaatgttcgggtctttcaacaaatataaacttcgtttaatcaattgctaga 22580648  T
Q  137 taaagttaagcttcaatcttactgg---tggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||||||||||||||||   ||||||||||| |||  || |||||||  ||| ||||||||||| |||||||| |||| |||||||    
T  22580647 taaagtgaagcttcaatcttactggtgctggctgaaagcgaatagtcctagttttactttttcctaccattcgtggtggttgaatcatttacct 22580554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 19021153 - 19021337
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  19021153 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 19021252  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||| ||||||||||||||||| || |  | ||||||||||||||||| |||||| |||||||| || | |||||||    
T  19021253 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctgccattcatggtggttgaaccctttacct 19021337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 22639322 - 22639506
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  22639322 atcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 22639421  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||| || |||||||||||||  || |  | |||||||||||||||||||||||| |||||||| || | |||||||    
T  22639422 taagctccaatcatattggtggctgaaagtgaaccgacctagttttgttttctcctaccattcatggtggttgaaccatttacct 22639506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 40973625 - 40973434
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | |||||||||||||| |||||| | ||||| || |||| ||  ||||| |||| ||| || ||| |  ||||||| ||||    
T  40973625 gcttttaatctcatatggctttcttgtgtgtgggttatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttccatcaattactag 40973526  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||| |||| |||||||| ||||||||||||||||| || | || |||||||  ||| ||||||||||  |||||||| ||  ||||||||    
T  40973525 ataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctagttttactttttcctaccatttgtggtggttgaactttttacct 40973434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 25982444 - 25982341
Alignment:
Q  124 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatctttt 223  Q
    ||||||| ||||||||| |||| |||||||| ||||||||||||||||| || | ||  || |||||||| ||||||||||  |||||||| || | |||    
T  25982444 atcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccgtccaagctttgttttttcctaccatttgtggtggttgaacccttt 25982345  T
Q  224 acct 227  Q
    ||||    
T  25982344 acct 25982341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 6536978 - 6537024
Alignment:
Q  181 ttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||| |||||||| || | |||||||    
T  6536978 ttagttttgttttctcctaccattcatggtggttgaaccctttacct 6537024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 47590811 - 47590618
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  47590811 ccgcttttcatcttatatgattatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagtttcgattaatcaattgct 47590712  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  47590711 agataaagttaagcttcaatcttattggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaaatcatttacct 47590618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 48640478 - 48640671
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||    
T  48640478 ccgcttttcttcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagcttcgattaatcaactgct 48640577  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  48640578 agataaagttaatcttcaatcttactggtggctgaaagcaaatcgtcatagttttgttttctcctaccattcttggtggttaaatcttttacct 48640671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 56024790 - 56024982
Alignment:
Q  35 cgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgcta 134  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  56024790 cgcttttcatcttatatggttatcttgtgtgtggttgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgcta 56024889  T
Q  135 gataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||||| |||||||    
T  56024890 gataaagttaagcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttgatgtttaaatcctttacct 56024982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 40850560 - 40850751
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  40850560 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcggatttttcaccaaacagaagcttcgattaatcaattgctag 40850659  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||| |||||||    
T  40850660 ataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttttcctaccattcttggtggttaaatcctttacct 40850751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 37870993 - 37870811
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||| |||| |||||||| |||||||||||||||||||||| || |   |||||||||| |||||||||  |||||||||||||||||||||| |    
T  37870993 cttatttggctatcatgtgtgtgagtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 37870894  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    || |||||||||||| ||||||||| ||||||| || | |||||||||||||||||||||| |||||||| |||| |||||||    
T  37870893 agtttcaatcttactagtggctgaaggcaaatcgtcctggttttgttttctcctaccattcatggtggttgaatcctttacct 37870811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 36652078 - 36651894
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  36652078 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 36651979  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||| || |||||||||||||| || |  |||||||||||||||||||||||||| |||||||| || | |||||||    
T  36651978 taagctccaatcatattggtggctgaaagcgaaccgacttagttttgttttctcctaccattcatggtggttgaaccctttacct 36651894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 43499060 - 43499244
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| |||| |||||| |||||||     |||||||||| |||||||||  ||||||||||| ||||||||||    
T  43499060 atcttatttggctatcttgtgtgtgggtgatctggcgtgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 43499159  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||| ||||||||||||||||| || |  | |||||||||||||||||||||||| |||||||| || | |||||||    
T  43499160 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttacct 43499244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 9896843 - 9896659
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||||||     || ||||||| ||||||||   ||||||||||| ||||||||||    
T  9896843 atcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgaatattccaccaaaaagaagcttattttaatcaattgttagataaagt 9896744  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||| |||||||| ||||||||||||||||| || |  |  ||||||||||||||||||||||| |||||||| || | |||||||    
T  9896743 taaacttcaatcatactggtggctgaaagcgaaccgcccaagttttgttttctcctaccattcatggtggttgaaccctttacct 9896659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 42718333 - 42718517
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||     |||||||||| ||||||||   ||||||||||| ||||||||||    
T  42718333 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttattttaatcaattgttagataaagt 42718432  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||| ||||| ||||||||||||||||| || |  | || ||||||||||||||||||||| |||||||| || | |||||||    
T  42718433 taagctccaatcatactggtggctgaaagcgaaccgacctaattttgttttctcctaccattcatggtggttgaaccctttacct 42718517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 7743335 - 7743519
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||     || ||||||| |||||||||  ||||||||||| || |||||||    
T  7743335 atcttatttggctatcttgcgtgtgggtgatctggcttgaaagaaatgctcgcatattccaccaaaaagaagcttcttttaatcaattgttaaataaagt 7743434  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||| ||||||||| ||||||| || |  | |||||||||||||||||||||||| |||||||| || | |||||||    
T  7743435 taagcttcaatcatactggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttacct 7743519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 39060046 - 39059874
Alignment:
Q  55 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 154  Q
    ||||||||||||||||||| || ||||||||||||||||     || ||||||| |||||||||  ||||||||||| |||||||| |||||||||||||    
T  39060046 tatcttgtgtgtgggtgatctgacttgaaaggaatgctcgaatattccaccaaaaagaagcttcttttaatcaattgttagataaaattaagcttcaatc 39059947  T
Q  155 ttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
     |||||||| |||||||| || || |  ||||||||||||||||||||||| |||||||| || | |||||||    
T  39059946 atactggtgactgaaagcgaaccacccaagttttgttttctcctaccattcatggtggttgaaccatttacct 39059874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 23106938 - 23106851
Alignment:
Q  63 gtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttc 150  Q
    ||||||||||||||||||||||||||||||| |   |||||||||| |||||||||  |||||||||||||||||||| |||||||||    
T  23106938 gtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaaattaagcttc 23106851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 40346137 - 40346001
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||| ||  ||||| |||| ||| || ||| | | |||||| ||||    
T  40346137 gcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattactag 40346038  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagc 172  Q
    ||||| |||| |||||||| |||||||||||||||||    
T  40346037 ataaaattaaacttcaatcatactggtggctgaaagc 40346001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 50771555 - 50771691
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | ||||||||||||||||||||||| ||||| ||  |||  |  ||||| |||| ||| |  ||| | |||||||| ||||    
T  50771555 gcttttaatctcatatggctttcttgtgtgtgggtgatttggctagaaagaaacactcgagtctttcatcaaaaagaggtctcgttcaatcaattactag 50771654  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagc 172  Q
    ||||| |||  |||||||| |||||||||||||||||    
T  50771655 ataaaattatacttcaatcatactggtggctgaaagc 50771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 30598584 - 30598393
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||  | ||||||||||||||||||||| | ||||| ||  | ||||  ||||| |||| ||| |  ||| | |||||||| || |    
T  30598584 gcttttaatctcatatgactttcttgtgtgtgggtgatttggatagaaagaaacacacaggtctttcatcaaaaagaggtatcgttcaatcaattactgg 30598485  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||| |||| |||||||| ||||||||||||||||| || || | ||  |||| ||| ||||||||||  |||||||| || | |||||||    
T  30598484 ataaaattaaacttcaatcatactggtggctgaaagcgaaccaacctacctttgctttttcctaccatttgtggtggttgaaccatttacct 30598393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 40858376 - 40858191
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||    
T  40858376 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgct 40858277  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatc 219  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| |||||||| |||||||||||    
T  40858276 agataaagttaagcttcaatcttactgatggctgaaagctaatcgtcctagttttgttttctccttccattcttagtggttaaatc 40858191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 40871649 - 40871467
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||| |||| | ||||||||||||||||||||||||||||| || |   |||||||||| |||||||||  |||||||||||||||||||||| |    
T  40871649 cttatttggctatcatttgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 40871550  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  40871549 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttacct 40871467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 17194226 - 17194045
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||| |    ||| |||||  | |||||||  ||||||||||||||||||||||||    
T  17194226 cttatttggttatcttgtgtgtgagtgatttgacttgaaaggaatgcttaaatcttt-accaataaaaagcttcttttaatcaattgctagataaagtta 17194128  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||| ||||||||||||||| ||||| || |||||||||| ||||||||||||| |||||||| |||| |||||||    
T  17194127 agcttcaatctcactggtggctgaaagaaaatcgtcatagttttgttctctcctaccattcgtggtggttgaatcctttacct 17194045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 1031987 - 1032171
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||| ||||||||||||||| | |||||||||||| ||||     |||||||||| |||||||||  ||||||||||  ||||||||||    
T  1031987 atcttatttggctatattgtgtgtgggtgatctagcttgaaaggaacgctcgaatatttcaccaaaaagaagcttcttttaatcaattattagataaagt 1032086  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||| ||||||||||||||||| || ||   ||||||||||||||||||| |||| |||||||| || | |||||||    
T  1032087 taagcttcaatcatactggtggctgaaagcgaaccacaatagttttgttttctcctactattcatggtggttgaaccatttacct 1032171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 9942927 - 9942772
Alignment:
Q  55 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 154  Q
    ||||||||||||||||||| ||||||||||| ||||||      |||||||||| |||||||||  ||||||||||| |||||||||||||||| |||||    
T  9942927 tatcttgtgtgtgggtgatctggcttgaaagaaatgcttgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatc 9942828  T
Q  155 ttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggt 210  Q
     ||||||||||||||||| || |  | |||||||||||||||||||||||| ||||    
T  9942827 atactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggt 9942772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 12623197 - 12623069
Alignment:
Q  99 tttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcct 198  Q
    |||||||||| ||| |||||  |||| ||||||||||||||||| |||||||||||||||| ||||| ||| ||||||| || |||||||||||||| ||    
T  12623197 tttcaccaaaaagaggcttcttttaaacaattgctagataaagtcaagcttcaatcttacttgtggccgaaggcaaatcgtcctagttttgttttcttct 12623098  T
Q  199 accattcttggtggttaaatcttttacct 227  Q
    ||||||| || ||||| |||| |||||||    
T  12623097 accattcatgatggttgaatcatttacct 12623069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 8123965 - 8124042
Alignment:
Q  127 aattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccatt 204  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||    
T  8123965 aattgttagataaagttaagcttcaatcttactggtggttgaaagctaatcgtcctagttttgttttctcctaccatt 8124042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 32575219 - 32575410
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||| ||  ||||| |||| ||| || ||| | |||||||| ||||    
T  32575219 gcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactag 32575318  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||| |||| |||||||| ||||||||||||||||| || | || ||  |||| ||| ||||||||||  |||||||| || | |||||||    
T  32575319 ataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttacct 32575410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 18299799 - 18299608
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | ||||||||||||||||||||| | ||||| |  |||| ||  ||||| |||| ||| || ||| |  ||||||| ||||    
T  18299799 gcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaatcgctcgggtctttcatcaaaaagaggcctcgttccatcaattactag 18299700  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||| |||| |||||||| ||||||||||||||||  || | || ||| |||| ||| ||||||||||  |||||||| || | |||||||    
T  18299699 ataaaattaaacttcaatcatactggtggctgaaagggaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccctttacct 18299608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 19323986 - 19324165
Alignment:
Q  48 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagc 147  Q
    |||||| | ||||||||||||||||||||| | ||||| || |||| ||  ||||| |||| ||| || ||| | |||||||| ||||||||| |||| |    
T  19323986 atatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaac 19324085  T
Q  148 ttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||| ||| ||||||||||||| || | || ||  |||| ||| ||||||||||  |||||||| || | |||||||    
T  19324086 ttcaatcataccggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttacct 19324165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 38141989 - 38142180
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||| ||  ||||| |||| ||| || ||| | | ||||||  |||    
T  38141989 gcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattattag 38142088  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||| |||| |||||||| ||||||||||||||||| || | || ||  |||| ||| ||||||||||  |||||||| || | |||||||    
T  38142089 ataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttacct 38142180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 15669442 - 15669632
Alignment:
Q  37 cttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctaga 136  Q
    ||||| |||| |||||| | ||||||||||||||||||| | | ||||| ||  ||| ||  ||||  |||| ||| || | | | |||||||| |||||    
T  15669442 cttttaatctcatatggctttcttgtgtgtgggtgatttcgatagaaagaaacactcgggtctttcttcaaaaagaggccttgttcaatcaattactaga 15669541  T
Q  137 taaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||| |||| |||||||| ||||||||||||||||| || | || ||  |||| ||| ||||||||||  |||||||| || | |||||||    
T  15669542 taaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttacct 15669632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 29126183 - 29126018
Alignment:
Q  62 tgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactgg 161  Q
    |||||||||||||||| | ||||| ||  ||| ||  ||||| |||| ||| || ||| | |||||||| ||||||||| ||||  ||||||| ||||||    
T  29126183 tgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaatttcaatcatactgg 29126084  T
Q  162 tggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||| || | || ||  |||| ||| ||||||||||  |||||||| || | |||||||    
T  29126083 tggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttacct 29126018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 41768014 - 41767942
Alignment:
Q  124 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctc 196  Q
    ||||||| || || ||| |||| |||||||||| ||| ||||||||||| |||| || ||| |||||||||||    
T  41768014 atcaattactcgacaaaattaaacttcaatctttctgatggctgaaagcgaatcgtcctagctttgttttctc 41767942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 6029078 - 6029267
Alignment:
Q  38 ttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagat 137  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  6029078 ttttgatcgtatatggttatcttgtgtttgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagat 6029177  T
Q  138 aaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||||||||||| | |||||||||||| |||| || |||||||||||||||||||||| | ||||||||||||| |||||||    
T  6029178 aaagttaagcttcaatcttattagtggctgaaagcgaatcgtcctagttttgttttctcctaccatacatggtggttaaatcatttacct 6029267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 18972967 - 18972781
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||     |||||||||| |||||||||| |||||||||||||    
T  18972967 ccgctcttaatcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctctaatctttcaccaaaaagaagcttcgtttaatcaattgct 18972868  T
Q  134 a-gataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatc 219  Q
      ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||| ||||    
T  18972867 ttgataaagttaagcttcaatcttactcgtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatc 18972781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 24393658 - 24393851
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||| |||||||||||||      |||||||||| |||||||||| ||||||||||| |    
T  24393658 ccgctcttaatcttatttggctatcttgtgtgtgggtgatttggcatgaaaggaatgctggaatctttcaccaaaaagaagcttcgtttaatcaattgtt 24393757  T
Q  134 agataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
     ||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  24393758 tgataaagttaagcctcaatcttactggtggctgaaagtaaatcgtcctagttttgttttctcctaccattcgtggtggttgaatcctttacct 24393851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 12912595 - 12912413
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||| |||| |||||||||||||| |||||||||||||||| |  |   |||||||||| |||||||||  |||||||||||||||||||||| |    
T  12912595 cttatttggctatcatgtgtgtgggtgatatggcttgaaaggaatgattggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 12912496  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  12912495 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttacct 12912413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 7093672 - 7093863
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||||||  ||||| |||| ||| || ||| | | |||||| ||||    
T  7093672 gcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcaggtctttcatcaaaaagaggcctcgttcattcaattactag 7093771  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||| |||| |||||||| ||||||||||||||||| || | || ||  |||| ||| ||||||||||  |||||||| || | |||||||    
T  7093772 ataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttacct 7093863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 30987330 - 30987217
Alignment:
Q  62 tgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactgg 161  Q
    ||||||||||||||||  || ||| ||||| |||  ||||| ||||| |||| | ||| || ||||||| ||||||||| |||| |||||||| || |||    
T  30987330 tgtgtgggtgatttgggctggaagaaatgcccagatttttctccaaaaagaaacctcgtttcatcaattactagataaaattaaacttcaatcatattgg 30987231  T
Q  162 tggctgaaagcaaa 175  Q
    ||||||||||||||    
T  30987230 tggctgaaagcaaa 30987217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 8753182 - 8753092
Alignment:
Q  124 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggtt 214  Q
    ||||||| || || ||| |||| |||||||||| ||||||| ||||||| |||| || ||| ||||||||||| || |||| |||||||||    
T  8753182 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggtt 8753092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 12250923 - 12250979
Alignment:
Q  133 tagataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttg 189  Q
    |||||||||||||||| ||||| | || |||| ||||||||||||||| || |||||    
T  12250923 tagataaagttaagctccaatccttctagtggttgaaagcaaatcatcataattttg 12250979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 32737387 - 32737327
Alignment:
Q  48 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaa 108  Q
    |||||| ||||||||||||| ||||||||| ||||||| || |||| ||  ||||||||||    
T  32737387 atatggctatcttgtgtgtgagtgatttggattgaaagaaacgctcgggtctttcaccaaa 32737327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 23541 - 23735
Alignment:
Q  34 ccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgct 133  Q
    ||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||||| |||||||||||||    
T  23541 ccgctcttaatcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctcaaatctttcaccaaaaagaagcttcgtttaatcaattgct 23640  T
Q  134 a-gataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
      ||||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  23641 ttgataaagttaagcttcattcttactcgtggctgaaagcaaatcgtcatagttttgttttctcctaccattcgtggtggttgaatcatttacct 23735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 94633 - 94815
Alignment:
Q  45 cttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 144  Q
    ||||| ||| |||| | ||||||||||||||||||||||||||||| || |   |||||||||| |||||||||  |||||||||||||||||||||| |    
T  94633 cttatttggctatcatttgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 94732  T
Q  145 agcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||| |||| |||||||    
T  94733 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttacct 94815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 9340 - 9524
Alignment:
Q  43 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctagataaagt 142  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||||||     |||||||||| ||||||||   ||||||||||| ||||||||||    
T  9340 atcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttcaccaaaaagaagcttattttaatcaattgttagataaagt 9439  T
Q  143 taagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    |||||||||||| ||||||||||||||||| || |  | |||||||||||||||||||||||| |||||||| || | |||||||    
T  9440 taagcttcaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttacct 9524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 8850 - 9041
Alignment:
Q  36 gcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcaggcttttcaccaaacagaagcttcgattaatcaattgctag 135  Q
    |||||| |||| |||||| | ||||||||||||||||||||| | ||||| || |||| ||  ||||| | || ||| || ||| || ||||||| ||||    
T  8850 gcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatctaaaagaggcctcgtttcatcaattactag 8949  T
Q  136 ataaagttaagcttcaatcttactggtggctgaaagcaaatcatcttagttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||| |||| |||||||| ||||||||||||||||| || | || ||| |||| ||| ||||||||||  |||||||| || | |||||||    
T  8950 ataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccctttacct 9041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 124397 - 124353
Alignment:
Q  183 agttttgttttctcctaccattcttggtggttaaatcttttacct 227  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  124397 agttttgttttctcctaccattcttggtggttaaatcctttacct 124353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 867 - 904
Alignment:
Q  182 tagttttgttttctcctaccattcttggtggttaaatc 219  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  867 tagttttgttttctcctaccattcatggtggttgaatc 904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University