View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_46 (Length: 204)
Name: NF21215_low_46
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_46 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 6095001 - 6094806
Alignment:
| Q |
9 |
aagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatatgttcaatg |
108 |
Q |
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| T |
6095001 |
aagaatgtctgaagagaatcaatcttttcaacgccaattgcagcagaaacgtgaaaatgaacttgacaagttacaagctgctgtaagtatttgttcaata |
6094902 |
T |
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| Q |
109 |
ttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatcaaaccaatacatttatatattttgattt |
204 |
Q |
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| T |
6094901 |
ttaatttatttttatgattatggttaatgtgttgtttttatagaaaatgtgttcaattttgttcaacccaaccagtacatttatatgctttgattt |
6094806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 44162735 - 44162540
Alignment:
| Q |
9 |
aagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatatgttcaatg |
108 |
Q |
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| T |
44162735 |
aagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaata |
44162636 |
T |
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| Q |
109 |
ttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatcaaaccaatacatttatatattttgattt |
204 |
Q |
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| T |
44162635 |
ttaatttatttttatgattatggttaatgtgttgtttttatagaaaatgtgttcaattttgttcaatccaaccagtacatttgtatgctttgattt |
44162540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 44188855 - 44188660
Alignment:
| Q |
9 |
aagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatatgttcaatg |
108 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44188855 |
aagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaata |
44188756 |
T |
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| Q |
109 |
ttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatcaaaccaatacatttatatattttgattt |
204 |
Q |
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| T |
44188755 |
ttaatttatttttatgattatggttaatgtgttgtttttatagaaaatgtgttcaattttgttcaatccaaccagtacatttgtatgctttgattt |
44188660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 32727983 - 32727788
Alignment:
| Q |
9 |
aagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatatgttcaatg |
108 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32727983 |
aagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaata |
32727884 |
T |
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| Q |
109 |
ttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatcaaaccaatacatttatatattttgattt |
204 |
Q |
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| T |
32727883 |
ttaatttatttttatgattgtggttaatgtgttgtttttatagaaaatgtattcaattttgttcaatccaaccagtacatttgtatgctttgattt |
32727788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 32718999 - 32718839
Alignment:
| Q |
9 |
aagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatatgttcaatg |
108 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
32718999 |
aagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatttattcaata |
32718900 |
T |
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| Q |
109 |
ttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttg |
169 |
Q |
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| T |
32718899 |
ttaatttatttttatgattgtggttaatgtgttgtttttatagaaaatgtgttcaattttg |
32718839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 43095301 - 43095492
Alignment:
| Q |
10 |
agaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatatgttcaatgt |
109 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
43095301 |
agaatgtctgaggagaatcaatcttttcaacgccaattgcagcagaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaatat |
43095400 |
T |
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| Q |
110 |
taatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatcaaaccaatacatttatatattttgattt |
204 |
Q |
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||||||||||||||||||||| ||| ||| ||| |||||| ||||| ||| ||||||||||| || || |||||||||||||| |||||||| |
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| T |
43095401 |
taatttatttttatgattatgcttagtgttttgtttttat---aaatgcgtttaattttgttcagtccaatcaatacatttatatgctttgattt |
43095492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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