View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_47 (Length: 203)
Name: NF21215_low_47
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 41651329 - 41651162
Alignment:
| Q |
18 |
agaaatatcttaaacatttaaaatgcataaccgtcagaaaggagtgttgagcgttgcataaagatcggattgtccgcatttcaagctcggtaattttgat |
117 |
Q |
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| T |
41651329 |
agaaatatcttaaacatttaaaatgcataaccgtcagaaaggagtgttgagcgttgcataaagatcggattgtccgcatttcaagctcggtaattttgat |
41651230 |
T |
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| Q |
118 |
tataacaaaatccacatattttgtga---atttgatctgaatctaacagtcaccaaggcacggctaac |
182 |
Q |
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| T |
41651229 |
tataacaaaatccacatattttgtgaactatttgatctgaatctaacagtcaccaaggcacggctaac |
41651162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 43226965 - 43227024
Alignment:
| Q |
121 |
aacaaaatccacatattttgtgaa---tttgatctgaatctaacagtcaccaaggcacgg |
177 |
Q |
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| T |
43226965 |
aacaaaatccacatattttgtgaactatttgatctgaatctaacggtcatcaaggcacgg |
43227024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 43226804 - 43226850
Alignment:
| Q |
20 |
aaatatcttaaacatttaaaatgcataaccgtcagaaaggagtgttg |
66 |
Q |
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| T |
43226804 |
aaatatcttaaacagttgaagtgcataaccgtcagagaggagtgttg |
43226850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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