View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21215_low_8 (Length: 472)
Name: NF21215_low_8
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 237 - 453
Target Start/End: Original strand, 28630270 - 28630486
Alignment:
| Q |
237 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
336 |
Q |
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| T |
28630270 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
28630369 |
T |
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| Q |
337 |
catatgtagttttatacttggccatatgtttagattaatagtttggaaatacattaatcatcatatgcttgtattgtagagctacaatattattgatatt |
436 |
Q |
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| T |
28630370 |
catatgtagttatatacttggccatatgtttagattaatagtttggaaatacattaatcatcatatgcttgtattgtagagctacaatattattgatatt |
28630469 |
T |
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| Q |
437 |
gttgcatgtgtaactta |
453 |
Q |
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| T |
28630470 |
gttgcatgtgtaactta |
28630486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 28630063 - 28630260
Alignment:
| Q |
9 |
gagatgaaacaattagccaacaaacgtcaatccgttcataacacgagcaccagaatggacaacaatatcgagttcaacataaatcaacaaacatatatca |
108 |
Q |
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| T |
28630063 |
gagatgaaacaattagccaacaaacttcaatccgttcataacacgagcaccagaatggacaacaatatggagttcaacataaatcaacaaacatatatca |
28630162 |
T |
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| Q |
109 |
atttcggtgcaagccatgaacatcatcacgttcatgaggacaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaaacaat |
206 |
Q |
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| T |
28630163 |
atttcggtgcaagccatgaacatcatcacgttcatgaggacaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaagcaat |
28630260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 28615943 - 28616068
Alignment:
| Q |
204 |
aatgtaacaccatcatcaaatttttggattaaggaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctg |
303 |
Q |
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|||||||||| ||| |||||||||||||||||| | | |||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |
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| T |
28615943 |
aatgtaacacaatcttcaaatttttggattaagcaagctgctaatgagttattatcatttgataattgggatgagcttggatcagttgtgaattttgttt |
28616042 |
T |
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| Q |
304 |
ttgattcacctagtttgtaaatagta |
329 |
Q |
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| T |
28616043 |
cagattcacctagtatgtaaatagta |
28616068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 28615771 - 28615812
Alignment:
| Q |
71 |
caatatcgagttcaacataaatcaacaaacatatatcaattt |
112 |
Q |
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| T |
28615771 |
caatatggagttgaacacaaatcaacaaacatatatcaattt |
28615812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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