View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21215_low_9 (Length: 457)
Name: NF21215_low_9
Description: NF21215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21215_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Complemental strand, 50356385 - 50355964
Alignment:
| Q |
22 |
ccctccacctctactcagccaccaccaccac---ttcaaattcaaattcctcccaagagccataaccaacctttaactctcgattttactaaaccttaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50356385 |
ccctccacctctactcagccaccaccaccaccacttcaaattcaaattcctcccaagagccataaccaacctttaactctcgattttactaaaccttaca |
50356286 |
T |
|
| Q |
119 |
cctttagatctaaccctaaatccttagatctagaaatccccaaggaaacatttagttttccatcactcctgtcctccgccatcacctgcgacggcagtgt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50356285 |
cctttatatctaaccctaaatccttagatctagaaatccccaaggaaacatttagttttccatcactcctgtcctccgccatcaccggcgacggcagtgt |
50356186 |
T |
|
| Q |
219 |
ttccaatggcaggctaggtccatgtccatgtccatctatcatccccacccccgctgtctcccaaggtaaacagcctctttcatccatcacaccattcatg |
318 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50356185 |
ttccgatggcaggctaggtccatgt------ccatctatcatccccacccccgctgtctcccgaggtaaacagcctctttcatccatcacaccattcatg |
50356092 |
T |
|
| Q |
319 |
tcctcccccattaccggccattacaccggcgaaggcagtgcttccaatggcagactaggtctatctccattccttaccccctctgtctcccgtggtaaac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50356091 |
tcctcccccattaccggccattacaccggcgaaggcagtggttccaatggcagactaggtctatctccattccttaccccctctgtctcccgtggtaaac |
50355992 |
T |
|
| Q |
419 |
agcctcttgcatcttactcatccttcat |
446 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
50355991 |
agcctcttacatcttactcatccttcat |
50355964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University