View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21216_low_4 (Length: 262)
Name: NF21216_low_4
Description: NF21216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21216_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34405466 - 34405247
Alignment:
| Q |
1 |
ttacataatctggattggctaccaccataggaatcctttttgcagcgcaaagctccaatattttttcaaggtcttcaagtttcattgaacgtgcattccc |
100 |
Q |
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| T |
34405466 |
ttacataatctggattggctaccaccataggaatcctttttgcagcgcaaagctccaatatttgttcaaggtcttcaagtttcattgaacgtgcattccc |
34405367 |
T |
|
| Q |
101 |
attggcatcccccaaggcttcagtcccatgagccaaaacaaactcagcttcttcaacattctccacaactcgcaagtccaatccctagacaaagttattt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34405366 |
attggcaccccccaaggcttcagtcccatgagccaaaacaaactcagcttcttcaacattctccacaactcgcaagtccaagccctagacaaagttattt |
34405267 |
T |
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| Q |
201 |
gtatgctgtaagatttcaaa |
220 |
Q |
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||||||||||||||||||| |
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| T |
34405266 |
atatgctgtaagatttcaaa |
34405247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34399792 - 34399573
Alignment:
| Q |
1 |
ttacataatctggattggctaccaccataggaatcctttttgcagcgcaaagctccaatattttttcaaggtcttcaagtttcattgaacgtgcattccc |
100 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34399792 |
ttacataatctggattcgctaccaccataggaatcctttttgcagcgcaaagctccaatatttgttcaaggtcttcaagtttcattgaacgtgcattccc |
34399693 |
T |
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| Q |
101 |
attggcatcccccaaggcttcagtcccatgagccaaaacaaactcagcttcttcaacattctccacaactcgcaagtccaatccctagacaaagttattt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34399692 |
attggcaccccccaaggcttcagtcccatgagccaaaacaaactcagcttcttcaacattctccacaactcgcaagtccaagccctagacaaagttattt |
34399593 |
T |
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| Q |
201 |
gtatgctgtaagatttcaaa |
220 |
Q |
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||||||||||||||||||| |
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| T |
34399592 |
atatgctgtaagatttcaaa |
34399573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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