View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21216_low_5 (Length: 262)
Name: NF21216_low_5
Description: NF21216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21216_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 29335347 - 29335105
Alignment:
| Q |
14 |
tcatcaaaatgcacacaagagagaaagaacattagcaaagcgagctatgcgaattggactattcactgagaggtatgcatgtcttgcatctctgcctctc |
113 |
Q |
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| T |
29335347 |
tcatcaaaatgcacacaagagagaaagaacattagcaaagcgagctatgcgaattggactattcactgagaggtatgcatgtcttgcatctctgcctctc |
29335248 |
T |
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| Q |
114 |
aatggttctttcagggcattaggtataaagacacactcttcactacaccatggtttttcgccgccaacaataaggcctagtcctgagataaaaagcaatg |
213 |
Q |
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| T |
29335247 |
aatggttctttcagggcattaggtataaagacacactcttcactacaccatggtttttcgccgccaacaataaggcctagtcctgagataaaaagcaatg |
29335148 |
T |
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| Q |
214 |
taagattcaaacaaggatctatcggtcatccgatattcttgga |
256 |
Q |
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| T |
29335147 |
taagattcaaacaaggatctatcggtcatccgatattcttgga |
29335105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 33032583 - 33032407
Alignment:
| Q |
18 |
caaaatgcacacaagagagaaagaacattagcaaagcgagctatgcgaattggactattcactgagaggt---atgcatgtcttgcatctctgcctctca |
114 |
Q |
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| T |
33032583 |
caaaatgcacataaaagagaaagaacattagcaaaaagagctatgagaatgggaatgttttctgataggtataatgctagtttagcatctttacctttgc |
33032484 |
T |
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| Q |
115 |
atggttctttcagggcattaggtataaagacacactcttcactacaccatggtttttcgccgccaacaataaggcct |
191 |
Q |
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| T |
33032483 |
atggttcttttaggtcattagggataaaagcacactcttcaatgcactatggtttctcaccaacaacaattaggcct |
33032407 |
T |
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