View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21217_high_1 (Length: 989)

Name: NF21217_high_1
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21217_high_1
NF21217_high_1
[»] chr2 (18 HSPs)
chr2 (18-491)||(939211-939686)
chr2 (747-883)||(939904-940040)
chr2 (522-677)||(939679-939834)
chr2 (768-880)||(18206685-18206797)
chr2 (361-667)||(25678269-25678579)
chr2 (433-667)||(24928727-24928965)
chr2 (770-884)||(28033598-28033712)
chr2 (931-981)||(940072-940122)
chr2 (364-461)||(37892989-37893086)
chr2 (364-507)||(11573633-11573776)
chr2 (607-668)||(11815698-11815759)
chr2 (365-494)||(12969212-12969340)
chr2 (771-857)||(15424297-15424383)
chr2 (562-677)||(31119299-31119413)
chr2 (363-419)||(20685005-20685061)
chr2 (931-978)||(31119000-31119047)
chr2 (768-880)||(27333032-27333141)
chr2 (819-880)||(20931106-20931167)
[»] chr1 (25 HSPs)
chr1 (362-677)||(49033496-49033810)
chr1 (748-906)||(49033267-49033425)
chr1 (747-906)||(28443287-28443446)
chr1 (556-677)||(28443095-28443216)
chr1 (749-884)||(48997001-48997136)
chr1 (766-884)||(50907584-50907702)
chr1 (775-884)||(33298776-33298885)
chr1 (768-880)||(43784936-43785048)
chr1 (364-494)||(11821160-11821292)
chr1 (931-981)||(28443464-28443514)
chr1 (931-981)||(49033195-49033245)
chr1 (562-663)||(24965806-24965907)
chr1 (766-884)||(28540940-28541047)
chr1 (433-507)||(35577459-35577533)
chr1 (607-677)||(48996857-48996927)
chr1 (367-472)||(28442925-28443030)
chr1 (391-498)||(33403070-33403177)
chr1 (357-419)||(3792289-3792351)
chr1 (363-425)||(3792471-3792533)
chr1 (607-677)||(44488270-44488340)
chr1 (607-668)||(28541147-28541208)
chr1 (363-411)||(28476013-28476061)
chr1 (808-884)||(44488460-44488536)
chr1 (766-801)||(44488429-44488464)
chr1 (607-668)||(50907424-50907485)
[»] chr4 (27 HSPs)
chr4 (747-906)||(51718513-51718672)
chr4 (522-677)||(51718288-51718443)
chr4 (766-906)||(634158-634298)
chr4 (766-906)||(40451332-40451472)
chr4 (766-884)||(32309934-32310052)
chr4 (766-890)||(850209-850333)
chr4 (771-883)||(42562773-42562885)
chr4 (364-492)||(33164455-33164583)
chr4 (364-507)||(55523725-55523868)
chr4 (401-494)||(36217907-36218000)
chr4 (567-667)||(40923560-40923660)
chr4 (808-884)||(39463416-39463492)
chr4 (567-664)||(634400-634498)
chr4 (931-981)||(634087-634137)
chr4 (554-667)||(40451120-40451233)
chr4 (931-981)||(51718695-51718745)
chr4 (562-668)||(32310151-32310257)
chr4 (433-507)||(24972459-24972533)
chr4 (607-668)||(850430-850491)
chr4 (364-507)||(12586184-12586328)
chr4 (363-494)||(53267749-53267880)
chr4 (433-507)||(636519-636593)
chr4 (361-423)||(28796617-28796679)
chr4 (749-835)||(38649865-38649951)
chr4 (768-857)||(13505415-13505504)
chr4 (391-472)||(36498933-36499014)
chr4 (607-668)||(21058507-21058568)
[»] chr5 (16 HSPs)
chr5 (364-677)||(6702370-6702683)
chr5 (747-906)||(6702753-6702901)
chr5 (766-884)||(2740906-2741024)
chr5 (766-884)||(13272061-13272179)
chr5 (372-507)||(30491730-30491865)
chr5 (361-507)||(33144119-33144265)
chr5 (607-677)||(13271902-13271972)
chr5 (944-981)||(6702916-6702953)
chr5 (604-676)||(22553127-22553199)
chr5 (750-857)||(24211179-24211286)
chr5 (364-472)||(5504736-5504844)
chr5 (364-424)||(6269236-6269296)
chr5 (364-411)||(34017650-34017697)
chr5 (607-677)||(2740745-2740815)
chr5 (361-415)||(36581111-36581165)
chr5 (768-857)||(8431209-8431298)
[»] chr3 (16 HSPs)
chr3 (747-906)||(39688334-39688493)
chr3 (556-677)||(39688563-39688684)
chr3 (766-884)||(34440285-34440403)
chr3 (766-843)||(53630130-53630207)
chr3 (363-507)||(44836413-44836557)
chr3 (364-507)||(15041941-15042084)
chr3 (931-981)||(39688262-39688312)
chr3 (391-507)||(34086775-34086891)
chr3 (768-857)||(2811434-2811523)
chr3 (768-857)||(41071219-41071308)
chr3 (391-507)||(19866760-19866876)
chr3 (364-455)||(6162669-6162760)
chr3 (391-494)||(53827609-53827712)
chr3 (768-857)||(7627146-7627235)
chr3 (359-419)||(4969870-4969930)
chr3 (391-472)||(7666932-7667013)
[»] chr8 (18 HSPs)
chr8 (495-677)||(9384696-9384878)
chr8 (754-866)||(9384956-9385068)
chr8 (766-884)||(14094929-14095047)
chr8 (766-884)||(10529264-10529382)
chr8 (365-464)||(9384617-9384716)
chr8 (363-592)||(23558852-23559062)
chr8 (766-846)||(37229972-37230052)
chr8 (804-884)||(37229896-37229976)
chr8 (364-472)||(34276192-34276300)
chr8 (554-677)||(10529048-10529171)
chr8 (602-677)||(37230141-37230216)
chr8 (364-419)||(37687335-37687390)
chr8 (607-668)||(14094768-14094829)
chr8 (613-677)||(22721282-22721346)
chr8 (768-835)||(16995655-16995722)
chr8 (364-419)||(33220024-33220078)
chr8 (362-420)||(28703879-28703937)
chr8 (607-668)||(20520600-20520661)
[»] scaffold0262 (1 HSPs)
scaffold0262 (766-906)||(9808-9948)
[»] chr7 (26 HSPs)
chr7 (766-906)||(41799563-41799702)
chr7 (766-885)||(8525106-8525225)
chr7 (766-884)||(38455409-38455527)
chr7 (764-884)||(13553111-13553231)
chr7 (768-880)||(21065904-21066016)
chr7 (588-676)||(13552936-13553024)
chr7 (358-529)||(20379581-20379752)
chr7 (367-494)||(26604121-26604248)
chr7 (584-667)||(41799801-41799884)
chr7 (560-669)||(8525322-8525431)
chr7 (388-494)||(30359727-30359834)
chr7 (364-507)||(44552637-44552780)
chr7 (603-677)||(8231734-8231807)
chr7 (607-677)||(38455249-38455319)
chr7 (768-880)||(12625296-12625408)
chr7 (769-837)||(16728672-16728740)
chr7 (769-837)||(17705744-17705812)
chr7 (361-419)||(38790881-38790940)
chr7 (942-981)||(41799491-41799530)
chr7 (363-409)||(5060847-5060893)
chr7 (769-843)||(17715723-17715797)
chr7 (931-975)||(13553277-13553321)
chr7 (804-847)||(16728631-16728674)
chr7 (804-847)||(17705703-17705746)
chr7 (769-828)||(29033520-29033579)
chr7 (364-419)||(31853294-31853349)
[»] scaffold0408 (1 HSPs)
scaffold0408 (766-884)||(5271-5389)
[»] scaffold1212 (2 HSPs)
scaffold1212 (766-884)||(1374-1492)
scaffold1212 (607-668)||(1590-1651)
[»] chr6 (15 HSPs)
chr6 (766-881)||(35007094-35007209)
chr6 (747-906)||(24122472-24122630)
chr6 (587-675)||(24122311-24122399)
chr6 (364-455)||(35060882-35060973)
chr6 (766-884)||(6287900-6288007)
chr6 (770-857)||(31020815-31020902)
chr6 (501-598)||(25400900-25400997)
chr6 (372-472)||(17436044-17436144)
chr6 (766-880)||(18790840-18790954)
chr6 (768-847)||(19222657-19222736)
chr6 (364-443)||(31522534-31522613)
chr6 (597-677)||(19222486-19222566)
chr6 (610-668)||(6288106-6288164)
chr6 (361-419)||(14153351-14153409)
chr6 (372-442)||(32275771-32275841)
[»] scaffold1763 (1 HSPs)
scaffold1763 (363-507)||(301-443)
[»] scaffold0046 (1 HSPs)
scaffold0046 (562-663)||(75127-75228)
[»] scaffold0010 (1 HSPs)
scaffold0010 (607-677)||(34555-34625)
[»] scaffold1063 (1 HSPs)
scaffold1063 (364-420)||(1475-1531)
[»] scaffold0695 (1 HSPs)
scaffold0695 (607-668)||(1620-1681)
[»] scaffold0041 (1 HSPs)
scaffold0041 (391-467)||(24340-24416)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 939211 - 939686
Alignment:
Q  18 gggtgtgattagaaaatgagaagaagaataagaagaatgtattggtgaatggagtagtttgtgatgtgaatgatttgtggtgttgagaggtgaaatgagt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  939211 gggtgtgattagaaaatgagaagaagaataagaagaaggtattggtgaatggagtagtttttgatgtgaatgatttgtggtgttgagaggtgaaatgagt 939310  T
Q  118 gaagtagaagataaggccattattagagtttaaatcgtttgtttggtttggtttcactttcagacatat--atattggtttggtttcgtattttcatttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  939311 gaagtagaagataaggccattattagagtttaaatcgtttgtttggtttggtttcactttcagacatatatatattggtttggtttcgtattttcatttg 939410  T
Q  216 cacatgtgggtgtctagagtccagtgcattcctctcaaattttgacggttagattcatgttatacttttatatccgatggttgatattttatttgactgg 315  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  939411 cacatgtgggtgtctagagtccagtgcgttccactcaaattttgacggttagatttatgttatacttttatatccgatggttgagattttatttgactgg 939510  T
Q  316 ggactcaaacagaggatctaggtgtctgtggctccaccaggggaattagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtcca 415  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||  ||| |||||||||||    
T  939511 ggactcaaacagaggatctaggtgtgtgtggctccactaggggaattagaattctgctcattattcaaatgattccgctcattcccaatgtaaatgtcca 939610  T
Q  416 aaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtca 491  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||    
T  939611 aaatgccccaatgcaacttaacttgtgtagcgtgagttaacatgcgctagttgtaagagaaacgtgacttaagtca 939686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 747 - 883
Target Start/End: Original strand, 939904 - 940040
Alignment:
Q  747 gtcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaa 846  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  939904 gtcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcttagatgttgtttagggtacaatgtgatagtttagggtttagaa 940003  T
Q  847 aatgtaagattacatagttgtttgaaaaatgcacact 883  Q
    |||||||||||||||||||||||||||||||||||||    
T  940004 aatgtaagattacatagttgtttgaaaaatgcacact 940040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 522 - 677
Target Start/End: Original strand, 939679 - 939834
Alignment:
Q  522 ttaagtcatttcccagcaacacagaaccgccattcctccattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgc 621  Q
    |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  939679 ttaagtcagtttccagcaacacagaacctccattcctccattttgcaacttttcaaaaaacaaaattttcaccctcatattcgaatttcaccattcttgc 939778  T
Q  622 gccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  939779 gccattcaaaccaaatttcatccacaatatcaagtaagtgattattatactacttc 939834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 768 - 880
Target Start/End: Complemental strand, 18206797 - 18206685
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgt 867  Q
    ||||||||||||||| |||| ||||||| |||||  |||||||||||||| |||||||||| |||||||||||||||||| ||| ||||| | |||||||    
T  18206797 gattgttagtgatgaattaagttaggaactgttgtttagatgttgtttagagtacaatgtggtagtttagggtttagaaattgttagatttcttagttgt 18206698  T
Q  868 ttgaaaaatgcac 880  Q
    ||||||| |||||    
T  18206697 ttgaaaattgcac 18206685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 361 - 667
Target Start/End: Original strand, 25678269 - 25678579
Alignment:
Q  361 ttagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgc 460  Q
    |||||||||| |||||||||||||   |  ||||||||||||||||||| ||| ||||||  || |  ||  |||||||||||||  |||||||||||||    
T  25678269 ttagaattctgctcattatccaaacagtatcgctcattttcaaagtaaaagtcaaaaatgctcctaaacatgttaacttgcgtagcatgagttaacatgc 25678368  T
Q  461 gctagttg----taagagaaacatgtcttaagtcacgcagcgtgacttaagatgcactacgtcatttaagtcatttcccagcaacacagaaccgccattc 556  Q
    |||||||     ||||   ||| || ||||||||| ||||||||| |||||   | | |||| | |||||||| ||  ||||| ||||  |   |  |||    
T  25678369 gctagttaattataaggagaacgtggcttaagtcatgcagcgtgagttaagtcacgcgacgttacttaagtcagttttcagcagcacatcagtacagttc 25678468  T
Q  557 ctccattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattc-aaaccaaattccgtccacaatatcaag 655  Q
    |  |||||  ||||||||| |||||| ||| |||||||| ||||  | || |||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  25678469 cctcatttcccaacttttctaaaaacgaaaatttcacccccaaatccaaaattcatcattcttgcgccattcaaaaccaaatt-cgtccacaatatcaag 25678567  T
Q  656 taagtgattatt 667  Q
    ||||||||||||    
T  25678568 taagtgattatt 25678579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 433 - 667
Target Start/End: Original strand, 24928727 - 24928965
Alignment:
Q  433 ttaacttgcgtagtgtgagttaacatgcgctagttg----taagagaaacatgtcttaagtcacgcagcgtgacttaagatgcactacgtcatttaagtc 528  Q
    ||||||||||||| |||||||||||||||||||||     ||||   ||| || ||||||||||||||||||| |||||   | | |||| | |||||||    
T  24928727 ttaacttgcgtagcgtgagttaacatgcgctagttaattataaggagaacgtgacttaagtcacgcagcgtgagttaagtcacgcgacgttacttaagtc 24928826  T
Q  529 atttcccagcaacacagaaccgccattcctccattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattc 628  Q
    | ||  ||||||||||  |   |  ||||  |||||  ||||||||| | |||| ||| |||||||| ||||  | || |||| |||||||||| |||||    
T  24928827 agttttcagcaacacatcagtacagttccctcatttcccaacttttctagaaacgaaaatttcacccccaaatccaaaattcatcattcttgcgtcattc 24928926  T
Q  629 aaa-ccaaattccgtccacaatatcaagtaagtgattatt 667  Q
    ||| |||||||| |||||||||||||||||||||||||||    
T  24928927 aaagccaaattc-gtccacaatatcaagtaagtgattatt 24928965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 770 - 884
Target Start/End: Original strand, 28033598 - 28033712
Alignment:
Q  770 ttgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgttt 869  Q
    |||||||||||   ||||||||||||||||||  |||| ||||||||| |||||||| | |||||||||||||| ||| |   ||||| | |||||||||    
T  28033598 ttgttagtgattgattaacttaggaattgttgtttagaagttgtttagagtacaatgcggtagtttagggtttacaaattactagattgcctagttgttt 28033697  T
Q  870 gaaaaatgcacacta 884  Q
    ||||| |||||||||    
T  28033698 gaaaattgcacacta 28033712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 931 - 981
Target Start/End: Original strand, 940072 - 940122
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  940072 ggattgttaatgatgtaattagttagaactatgtttgttaatgttgatgat 940122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 364 - 461
Target Start/End: Complemental strand, 37893086 - 37892989
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcg 461  Q
    ||||||| || |||| ||||||| || ||||||||  ||||||||| |||||||||| ||| |||||  ||||||| ||||| |||||||||||||||    
T  37893086 gaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaacttacgtagcgtgagttaacatgcg 37892989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 364 - 507
Target Start/End: Original strand, 11573633 - 11573776
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||| ||||||| |||||  ||  ||||||||  ||||||||| ||| |||||| ||| | | |  ||||||||||||| ||||||||||||| |||    
T  11573633 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcaaaaatgcccctacgtatgttaacttgcgtagcgtgagttaacatgtgct 11573732  T
Q  464 agttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    |||| ||||   ||| |  ||||||||||||||||||| |||||    
T  11573733 agttataaggagaacgtaacttaagtcacgcagcgtgagttaag 11573776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 11815698 - 11815759
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||||||||||||||||||||||| | |||| |  ||||||||||||||||||||| ||||    
T  11815698 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgatta 11815759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 365 - 494
Target Start/End: Complemental strand, 12969340 - 12969212
Alignment:
Q  365 aattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgcta 464  Q
    |||||| ||||||||| ||||| |||||||||||  ||||||||| || ||||||| ||| | |||  ||||| ||||||| |||| ||||  |||||||    
T  12969340 aattctgctcattatctaaatggttccgctcattc-caaagtaaaagttcaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgcgcta 12969242  T
Q  465 gttgtaagagaaacatgtcttaagtcacgc 494  Q
    ||| ||||| |||| |  ||||||||||||    
T  12969241 gttataagataaacgtaacttaagtcacgc 12969212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 771 - 857
Target Start/End: Complemental strand, 15424383 - 15424297
Alignment:
Q  771 tgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagatt 857  Q
    |||||||||||| |||| |||||||||||    |||||||||||||| || | ||||| |||||||||||||| ||| ||| |||||    
T  15424383 tgttagtgatgaattaaattaggaattgtaatttagatgttgtttagagtgctatgtggtagtttagggtttataaattgttagatt 15424297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 677
Target Start/End: Complemental strand, 31119413 - 31119299
Alignment:
Q  562 ttttgcaacttttcaaaaaacaaaattttcaccctcaaact-cgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagt 660  Q
    |||| ||||||||| ||| |||||||||||  |||| || | ||| ||||||||||||||| ||||||||| | |||| |   |||||||||||||||||    
T  31119413 ttttccaacttttctaaacacaaaattttc--cctctaagtgcgattttcaccattcttgcaccattcaaagccaatttctctcacaatatcaagtaagt 31119316  T
Q  661 gattattatactacttc 677  Q
    ||| ||||  |||||||    
T  31119315 gatgattaatctacttc 31119299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 20685005 - 20685061
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaat 419  Q
    |||||||| ||||||| ||||||| ||||||||||| |||||||||| ||| |||||    
T  20685005 agaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaat 20685061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 931 - 978
Target Start/End: Complemental strand, 31119047 - 31119000
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgttgat 978  Q
    |||||||||| |||| |||||||||||  |||||||||||||||||||    
T  31119047 ggattgttaatgatgaaattagttagaaatatgtttgttaatgttgat 31119000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 768 - 880
Target Start/End: Original strand, 27333032 - 27333141
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgt 867  Q
    ||||||||||||| | ||||  |||||||||| |  ||||||||   ||  |||||||||| ||||||| |||||| ||| ||| ||||| | |||||||    
T  27333032 gattgttagtgattaattaatgtaggaattgtagtttagatgtt---tacagtacaatgtggtagtttatggtttaaaaattgttagatttcttagttgt 27333128  T
Q  868 ttgaaaaatgcac 880  Q
    ||||||| |||||    
T  27333129 ttgaaaattgcac 27333141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 880
Target Start/End: Original strand, 20931106 - 20931167
Alignment:
Q  819 gtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgtttgaaaaatgcac 880  Q
    |||||||||| |||||||||| |||||||  || ||||| | |||||||||||||| |||||    
T  20931106 gtacaatgtggtagtttagggattagaaatcgttagatttcttagttgtttgaaaattgcac 20931167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-101; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 362 - 677
Target Start/End: Complemental strand, 49033810 - 49033496
Alignment:
Q  362 tagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcg 461  Q
    ||||||||| |||||||| |||||| |||||||||||  ||||||||||||||||| || | | | |||| ||||||||||||| || | ||||||||||    
T  49033810 tagaattctgctcattattcaaatggttccgctcattcccaaagtaaatgtccaaa-tgcctctacgcaatttaacttgcgtagcgttaattaacatgcg 49033712  T
Q  462 ctagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaagatgcactacgtcatttaagtcatttcccagcaacacagaaccgccattcctcca 561  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| | |||||||| || |||||||||||| ||| |||||||||||    
T  49033711 ctagttgtaagagaaacgtgacttaagtcacgcagcgtgacttaagatgcgctacgttacttaagtcagtttccagcaacacaggacctccattcctcca 49033612  T
Q  562 ttttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtg 661  Q
    |||| ||||||||||||| || |||||||||||||||||  |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  49033611 tttttcaacttttcaaaagacgaaattttcaccctcaaatccgaattccaccatttttgcgccattcaaaccaaatttcgtccacaatatcaagtaagtg 49033512  T
Q  662 attattatactacttc 677  Q
    ||||||||||||||||    
T  49033511 attattatactacttc 49033496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 748 - 906
Target Start/End: Complemental strand, 49033425 - 49033267
Alignment:
Q  748 tcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaa 847  Q
    |||||| |||||||||||||||||||||||||||||||||| |  |||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||    
T  49033425 tcttgcttgttaaagattatgattgttagtgatgatttaacatgagaattgttgtttagatgttgtttaaggtacaatgtggtagtttagggtttagaaa 49033326  T
Q  848 atgtaagattacatagttgtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  49033325 atgtaagattacatagttgtttgaaaaatgcacactacgtgttcaatgaaatgtttcaa 49033267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 747 - 906
Target Start/End: Original strand, 28443287 - 28443446
Alignment:
Q  747 gtcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaa 846  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||  ||||||||||||| ||||||||||| ||||||||||||||| |    
T  28443287 gtcttgcatgttaaagattatgattgttagtaatgatttaactttggaattgttgtttagatgttgtttatggtacaatgtggtagtttagggtttagta 28443386  T
Q  847 aatgtaagattacatagttgtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  28443387 aatgtataattacatagttgtttgaaaaatgcacactacgtgttcgatgaaatgtctcaa 28443446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 28443095 - 28443216
Alignment:
Q  556 cctccattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaag 655  Q
    |||||||||| |||||||||||||||   || |||||||| ||||  |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  28443095 cctccatttttcaacttttcaaaaaatgcaaatttcacccccaaatccgaatttcaccattattgcgtcattcaaaccaaatttcgtccacaatatcaag 28443194  T
Q  656 taagtgattattatactacttc 677  Q
    ||||||||||||||||||||||    
T  28443195 taagtgattattatactacttc 28443216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 749 - 884
Target Start/End: Original strand, 48997001 - 48997136
Alignment:
Q  749 cttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaa 848  Q
    ||||||||||||   | ||||||||||||||||| ||||||||| ||||||||  |||| ||||||||| |||||||||| |||||||||||||| |||     
T  48997001 cttgcatgttaattttgatgattgttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtggtagtttagggtttacaaat 48997100  T
Q  849 tgtaagattacatagttgtttgaaaaatgcacacta 884  Q
    ||| ||||||| |||||||||||||| |||||||||    
T  48997101 tgttagattacctagttgtttgaaaattgcacacta 48997136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 766 - 884
Target Start/End: Original strand, 50907584 - 50907702
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||| |||||||||||||| ||| | | | ||||| |||||    
T  50907584 atgattgttagtgatgaattaacttaggaattgttgtttagatgttgtttagagtacaatgtggtagtttagggtttacaaattattatattacctagtt 50907683  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  50907684 gtttgaaaattgcacacta 50907702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 775 - 884
Target Start/End: Complemental strand, 33298885 - 33298776
Alignment:
Q  775 agtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgtttgaaaa 874  Q
    |||||||| ||||||||||||||||||  |||| ||||||||  |||||||||| |||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  33298885 agtgatgaattaacttaggaattgttgtttagaagttgtttaaagtacaatgtgctagtttagggtttacaaattgttagattacctagttgtttgaaaa 33298786  T
Q  875 atgcacacta 884  Q
     |||||||||    
T  33298785 ttgcacacta 33298776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 768 - 880
Target Start/End: Complemental strand, 43785048 - 43784936
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgt 867  Q
    |||||||| |||||| |||| ||||||| |||||  |||||||||||||| |||||||||| |||||||| ||||||||| ||| ||| | | |||||||    
T  43785048 gattgttactgatgaattaagttaggaactgttgtttagatgttgtttagagtacaatgtggtagtttagtgtttagaaattgttagaattcttagttgt 43784949  T
Q  868 ttgaaaaatgcac 880  Q
    ||||||| |||||    
T  43784948 ttgaaaattgcac 43784936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 364 - 494
Target Start/End: Original strand, 11821160 - 11821292
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgc- 462  Q
    ||||||| ||||||||||||||| || || |||||  ||||||||| ||||||||||  || |||||  ||||||| |||| |||||||||||||||||     
T  11821160 gaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatgctcctatgcatgttaacttacgtattgtgagttaacatgcgct 11821259  T
Q  463 -tagttgtaagagaaacatgtcttaagtcacgc 494  Q
     ||||| |||||||||| |  ||||||||||||    
T  11821260 atagttataagagaaacgtaacttaagtcacgc 11821292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 931 - 981
Target Start/End: Original strand, 28443464 - 28443514
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28443464 ggattgttaatgatgtaattagttagagctatgtttgttaatgttgatgat 28443514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 931 - 981
Target Start/End: Complemental strand, 49033245 - 49033195
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49033245 ggattgttaatgatgtaattagttagagctatgtttgttaatgttgatgat 49033195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 562 - 663
Target Start/End: Complemental strand, 24965907 - 24965806
Alignment:
Q  562 ttttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtg 661  Q
    |||| |||||| |||||||||||||||||| ||  |||   ||| ||||||||||||||||||| ||||| | |||| |  |||||||||||||||||||    
T  24965907 ttttccaacttctcaaaaaacaaaattttctcctccaagtgcgattttcaccattcttgcgccaatcaaagccaatttctcccacaatatcaagtaagtg 24965808  T
Q  662 at 663  Q
    ||    
T  24965807 at 24965806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 766 - 884
Target Start/End: Complemental strand, 28541047 - 28540940
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||           ||||||||| |||||||||| |||||||||||||| ||| ||| |||| || | |||    
T  28541047 atgattgttagtgatgaattaacttaggaatt-----------gttgtttagagtacaatgtggtagtttagggtttacaaattgttagatgacctggtt 28540959  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  28540958 gtttgaaaattgcacacta 28540940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 35577533 - 35577459
Alignment:
Q  433 ttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    ||||||||||||| ||||||||||||||||||||| ||||   ||| |  ||||||||||||||||||| |||||    
T  35577533 ttaacttgcgtagcgtgagttaacatgcgctagttataaggagaacgtaacttaagtcacgcagcgtgagttaag 35577459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 607 - 677
Target Start/End: Original strand, 48996857 - 48996927
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||||||||||||||||||| | |||| |  ||||||||||||||||||||| ||||  |||||||    
T  48996857 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgattaccctacttc 48996927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 367 - 472
Target Start/End: Original strand, 28442925 - 28443030
Alignment:
Q  367 ttctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagt 466  Q
    |||| |||||||  |||||| |||||||||||  ||||||||| ||  |||||| ||| | |||  |||||||| |||| ||||||||||||||||||||    
T  28442925 ttctgctcattaatcaaatggttccgctcattcccaaagtaaaagttgaaaatgcccctacgcatgttaacttgtgtagcgtgagttaacatgcgctagt 28443024  T
Q  467 tgtaag 472  Q
    | ||||    
T  28443025 tataag 28443030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 391 - 498
Target Start/End: Complemental strand, 33403177 - 33403070
Alignment:
Q  391 cgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtc 490  Q
    ||||||||| ||||||||| ||| |||||| ||| | |||  ||||||||||||  ||||||||||||| ||||||| ||||   ||| |  ||||||||    
T  33403177 cgctcatttccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgtaacgtgagttaacatgtgctagttataaggagaacgtaacttaagtc 33403078  T
Q  491 acgcagcg 498  Q
    ||||||||    
T  33403077 acgcagcg 33403070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 3792289 - 3792351
Alignment:
Q  357 ggaattagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaat 419  Q
    |||| ||||||||| ||||||| |||||||||||  |||||| ||||| ||||||||||||||    
T  3792289 ggaactagaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaat 3792351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 3792533 - 3792471
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtccca 425  Q
    |||||| | ||||||||||||||| || ||||||||| ||| ||||| |||||||||||||||    
T  3792533 agaattatgctcattatccaaatggtttcgctcatttccaacgtaaaagtccaaaatgtccca 3792471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 607 - 677
Target Start/End: Original strand, 44488270 - 44488340
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||||||||||||||||||| | ||||    ||||||||||||||||||||| ||||  |||||||    
T  44488270 tttcaccattcttgcgccattcaaagccaatttttcccacaatatcaagtaagtgatgattaccctacttc 44488340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 28541208 - 28541147
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||| ||||||||||||||||||| | |||| | |||| ||||||||||||||||| ||||    
T  28541208 tttcatcattcttgcgccattcaaagccaatttcttccaaaatatcaagtaagtgatgatta 28541147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 28476061 - 28476013
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaatg 411  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  28476061 agaattctgctcattacccaaatggttccgctcattctcaaagtaaatg 28476013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 808 - 884
Target Start/End: Original strand, 44488460 - 44488536
Alignment:
Q  808 tgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgtttgaaaaatgcacacta 884  Q
    |||||||||| ||| ||| || |||||||||||||| ||| ||| ||||||| |||||||| ||||| | |||||||    
T  44488460 tgttgtttagagtataatatggtagtttagggtttacaaattgttagattacctagttgttcgaaaatttcacacta 44488536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 766 - 801
Target Start/End: Original strand, 44488429 - 44488464
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttg 801  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44488429 atgattgttagtgatgaattaacttaggaattgttg 44488464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 50907424 - 50907485
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||| ||||||||||||||||||| | |||| | |||| ||||||||||||| ||| ||||    
T  50907424 tttcatcattcttgcgccattcaaagccaatttcttccaaaatatcaagtaagcgatgatta 50907485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 5e-68; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 747 - 906
Target Start/End: Original strand, 51718513 - 51718672
Alignment:
Q  747 gtcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaa 846  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  51718513 gtctcgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgtttagatgttgtttagggtacaatgtggtagtttagggtttagaa 51718612  T
Q  847 aatgtaagattacatagttgtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  51718613 aatgtaagattacatagttgtttgaaaaatgcacactacgtgttcggtgaaatgtctcaa 51718672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 522 - 677
Target Start/End: Original strand, 51718288 - 51718443
Alignment:
Q  522 ttaagtcatttcccagcaacacagaaccgccattcctccattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgc 621  Q
    |||||||| || |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  51718288 ttaagtcagtttccagcaacacagaacctccattcctccatttttcaacttttcaaaaaacgaaattttcaccttcaaatccgaatttcaccattcttgc 51718387  T
Q  622 gccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  51718388 gccattcaaaccacaattcgtccacaatatcaagtaagtgattattatactacttc 51718443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 766 - 906
Target Start/End: Complemental strand, 634298 - 634158
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||  |  |||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||    
T  634298 atgattgttagtgaccaaataacttaggaattgttgtttagatgttgtttaaggtacaatgtggtagtttagggtttagaaaatgttagattacatagtt 634199  T
Q  866 gtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    |||||||||||||||||||||| |||| |||||||| ||||    
T  634198 gtttgaaaaatgcacactacgtgttcggtgaaatgtctcaa 634158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 766 - 906
Target Start/End: Original strand, 40451332 - 40451472
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||  |  |||||||||||||||||  ||||||||| ||| ||||||||||| |||| ||||||||| ||||||| |||||||||||||    
T  40451332 atgattgttagtgaccaaataacttaggaattgttgtttagatgttgcttacggtacaatgtggtagtatagggtttataaaatgttagattacatagtt 40451431  T
Q  866 gtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    ||||||||||| |||||||||| |||| |||||||| ||||    
T  40451432 gtttgaaaaatacacactacgtgttcggtgaaatgtctcaa 40451472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 766 - 884
Target Start/End: Complemental strand, 32310052 - 32309934
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||||||| |||||||||| |||||| ||||||| ||| ||| ||||||| |||||    
T  32310052 atgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtggtagtttcgggtttacaaattgttagattacctagtt 32309953  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  32309952 gtttgaaaattgcacacta 32309934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 766 - 890
Target Start/End: Complemental strand, 850333 - 850209
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    |||||||||||| |||| ||||||||||||||||||  |||| ||||||||| |||||||| | |||||||||||||| |||  || ||||||| |||||    
T  850333 atgattgttagtaatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgcggtagtttagggtttacaaatcgttagattacctagtt 850234  T
Q  866 gtttgaaaaatgcacactacgtatt 890  Q
    ||||||||| ||||||||| |||||    
T  850233 gtttgaaaattgcacactatgtatt 850209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 771 - 883
Target Start/End: Complemental strand, 42562885 - 42562773
Alignment:
Q  771 tgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgtttg 870  Q
    |||||||||||| ||||||||| ||||||||  |||||||||||||| |||||||||| |||||||||||||| ||| ||| ||||||| |||||||||     
T  42562885 tgttagtgatgaattaacttagaaattgttgtttagatgttgtttagagtacaatgtggtagtttagggtttacaaattgttagattacctagttgttta 42562786  T
Q  871 aaaaatgcacact 883  Q
    |||| ||||||||    
T  42562785 aaaattgcacact 42562773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 364 - 492
Target Start/End: Complemental strand, 33164583 - 33164455
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||| | |||  ||||| ||||||| |||| ||||  || |||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct 33164484  T
Q  464 agttgtaagagaaacatgtcttaagtcac 492  Q
    |||| |||||||||| |  ||||||||||    
T  33164483 agttataagagaaacgtaacttaagtcac 33164455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 364 - 507
Target Start/End: Original strand, 55523725 - 55523868
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||| |||||||||||||   |  ||||||||||||||||||| ||| |||||| ||| | |||  |||||||| |||   ||||||||||||||||    
T  55523725 gaattctgctcattatccaaacattatcgctcattttcaaagtaaaagtcgaaaatgcccctacgcatgttaacttgtgtatcttgagttaacatgcgct 55523824  T
Q  464 agttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    |||| ||||   |||||| ||||||||||||||||||| |||||    
T  55523825 agttataaggagaacatgacttaagtcacgcagcgtgagttaag 55523868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 36217907 - 36218000
Alignment:
Q  401 caaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtcacgc 494  Q
    ||||||||| |||||||||| ||| | |||  ||||||| ||||| |||||||||||||| |||||| |||||||||| || ||||||||||||    
T  36217907 caaagtaaaagtccaaaatgcccctacgcatgttaacttacgtagcgtgagttaacatgcactagttataagagaaacgtgacttaagtcacgc 36218000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 567 - 667
Target Start/End: Original strand, 40923560 - 40923660
Alignment:
Q  567 caacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattc-aaaccaaattccgtccacaatatcaagtaagtgatta 665  Q
    ||||||||| |||||| ||| |||||||| ||||  | || |||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||    
T  40923560 caacttttccaaaaacgaaaatttcacccccaaatccaaaattcatcattcttgcgccattcaaaaccaaatt-cgtccacactatcaagtaagtgatta 40923658  T
Q  666 tt 667  Q
    ||    
T  40923659 tt 40923660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 808 - 884
Target Start/End: Original strand, 39463416 - 39463492
Alignment:
Q  808 tgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgtttgaaaaatgcacacta 884  Q
    |||||||||| |||||||||| |||||||||||| | ||| ||| ||||||| |||||||||||||| |||||||||    
T  39463416 tgttgtttagagtacaatgtggtagtttagggttcacaaattgttagattacctagttgtttgaaaattgcacacta 39463492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 567 - 664
Target Start/End: Complemental strand, 634498 - 634400
Alignment:
Q  567 caacttttc-aaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaa-ccaaattccgtccacaatatcaagtaagtgatt 664  Q
    ||||||||| ||||||| ||| |||||||| ||||  |||| |||| |||||||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  634498 caacttttccaaaaaacgaaaatttcacccccaaatccgaaattcatcattcttgagccattcaaagccaaattc-gtccacaatatcaagtaagtgatt 634400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 931 - 981
Target Start/End: Complemental strand, 634137 - 634087
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  634137 ggattgttaatgatataattagttagagctatgtttgttaatgttgatgat 634087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 554 - 667
Target Start/End: Original strand, 40451120 - 40451233
Alignment:
Q  554 ttcctccattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaa-ccaaattccgtccacaatatc 652  Q
    |||| ||||||  ||||||||| |||||| ||| |||| ||| |||| ||||| ||||   |||||| |||||||||| |||||||| ||||||||||||    
T  40451120 ttcccccatttcccaacttttccaaaaacgaaaatttcgcccccaaattcgaaattcattgttcttgtgccattcaaagccaaattc-gtccacaatatc 40451218  T
Q  653 aagtaagtgattatt 667  Q
    |||||||||||||||    
T  40451219 aagtaagtgattatt 40451233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 931 - 981
Target Start/End: Original strand, 51718695 - 51718745
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  51718695 ggattgttaatgaagtaattagttagagctatgtttgttaatgttgatgat 51718745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 562 - 668
Target Start/End: Complemental strand, 32310257 - 32310151
Alignment:
Q  562 ttttgcaacttttcaaaaaacaaaattttcaccctcaaact-cgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagt 660  Q
    |||| |||||| || ||| ||||||||||| ||||| || | ||| ||||||||||||||||||||||||| | |||| |  ||||||||||||||||||    
T  32310257 ttttccaacttctccaaacacaaaattttc-ccctccaagtgcgattttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagt 32310159  T
Q  661 gattatta 668  Q
    ||| ||||    
T  32310158 gatgatta 32310151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 433 - 507
Target Start/End: Original strand, 24972459 - 24972533
Alignment:
Q  433 ttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    ||||||||||||| ||||||||||||||||||||| ||||   ||| |  ||||||||||||||||||| |||||    
T  24972459 ttaacttgcgtagcgtgagttaacatgcgctagttataaggagaacgtaacttaagtcacgcagcgtgagttaag 24972533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 850491 - 850430
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||||||||||||||||||||||| | |||| |  ||||||||||||||||||||| ||||    
T  850491 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgatta 850430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 507
Target Start/End: Original strand, 12586184 - 12586328
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaa-tgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgc 462  Q
    ||||||| ||||||| | |||  || |||||||||  ||||||||| ||| |||| || ||| |||||  ||||||||| ||| ||||||||||||||||    
T  12586184 gaattctgctcattacctaaacaataccgctcattcccaaagtaaaagtcgaaaaatgcccctatgcatgttaacttgcatagcgtgagttaacatgcgc 12586283  T
Q  463 tagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    ||||| ||||   ||| |  ||||||||||||| ||||| |||||    
T  12586284 tagttataaggagaacgtaacttaagtcacgcaacgtgagttaag 12586328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 363 - 494
Target Start/End: Complemental strand, 53267880 - 53267749
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgc 462  Q
    |||||||| | || |||||||||| |||| ||||||| |||||||||||| || | |||||| | |||  ||||| | ||||| |||| ||||  |||||    
T  53267880 agaattctgcacaatatccaaatggttccactcatttccaaagtaaatgttcatattgtccctacgcatgttaacatacgtagcgtgacttaagttgcgc 53267781  T
Q  463 tagttgtaagagaaacatgtcttaagtcacgc 494  Q
    ||||| |||||||||  ||  |||||||||||    
T  53267780 tagttataagagaaatgtgatttaagtcacgc 53267749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 636593 - 636519
Alignment:
Q  433 ttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    ||||||||||||| ||||||||| |||||||| || ||||   |||||| ||||||||||| ||||||| |||||    
T  636593 ttaacttgcgtagcgtgagttaaaatgcgctaattataaggagaacatgacttaagtcacgtagcgtgagttaag 636519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 28796617 - 28796679
Alignment:
Q  361 ttagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcc 423  Q
    |||||||||| ||||||| |||||  ||  |||||||| ||||||||||||||||||||||||    
T  28796617 ttagaattctgctcattacccaaacaatatcgctcattctcaaagtaaatgtccaaaatgtcc 28796679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 749 - 835
Target Start/End: Original strand, 38649865 - 38649951
Alignment:
Q  749 cttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagttt 835  Q
    |||||||||||   |||| ||||||||||||||| |||| ||||||||||| |  |||||||||||||| ||  |||||| ||||||    
T  38649865 cttgcatgttagttattaagattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtgaaatgtggtagttt 38649951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 768 - 857
Target Start/End: Complemental strand, 13505504 - 13505415
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagatt 857  Q
    ||||||||||||||| |||| ||| ||| ||| |  ||||||||||| ||  | ||||||| |||||||||||||||||| ||| |||||    
T  13505504 gattgttagtgatgaattaagttatgaactgtagtttagatgttgttaagaatgcaatgtggtagtttagggtttagaaattgttagatt 13505415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 36498933 - 36499014
Alignment:
Q  391 cgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaag 472  Q
    ||||||||  ||||||||| ||  |||||| ||| |||||  ||||||||| ||| ||||||||||||||||||||| ||||    
T  36498933 cgctcattcccaaagtaaaagttgaaaatgcccctatgcatgttaacttgcatagcgtgagttaacatgcgctagttataag 36499014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 21058568 - 21058507
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    |||||||||| |||||||||||||| | |||| | || | ||||||||||||||||| ||||    
T  21058568 tttcaccatttttgcgccattcaaagccaatttcttctaaaatatcaagtaagtgataatta 21058507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 4e-62; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 364 - 677
Target Start/End: Original strand, 6702370 - 6702683
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||| ||||||  ||||||  || |||||||| |||||||||| ||| |||||| ||  | |||  ||||||||||||| |||||||||||||| ||    
T  6702370 gaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacgcatgttaacttgcgtagcgtgagttaacatgcact 6702469  T
Q  464 agttgtaagagaaacatgtcttaagtcacgcagcgtgacttaagatgcactacgtcatttaagtcatttcccagcaacacagaaccgccattcctccatt 563  Q
    |||| |||| | |   || ||||||||||||||||||||||||| ||  |||||| | |||||||| ||  ||||||||||| | | |    ||||||||    
T  6702470 agttataagggtagtgtgacttaagtcacgcagcgtgacttaagttgtgctacgttacttaagtcagttatcagcaacacagcagcacagaacctccatt 6702569  T
Q  564 ttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgat 663  Q
    || |||||||||||||||| ||| |||||||| ||||  |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6702570 tttcaacttttcaaaaaacgaaaatttcacccccaaatccgaatttcactattcttgtgccattcaaaccaaatttcgtccacaatatcaagtaagtgat 6702669  T
Q  664 tattatactacttc 677  Q
    ||||||||||||||    
T  6702670 tattatactacttc 6702683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 747 - 906
Target Start/End: Original strand, 6702753 - 6702901
Alignment:
Q  747 gtcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaa 846  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||| |||||||||||||||||    
T  6702753 gtcttgcatattaaagattatgattgttagtgatgatttaacttaggaattgtt-----------gtttagggtacaatgtggtagtttagggtttagaa 6702841  T
Q  847 aatgtaagattacatagttgtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  6702842 aatgtaagattacatagttgtttgaaaaatgcacactacgtgttcgatgaaatgtctcaa 6702901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 766 - 884
Target Start/End: Original strand, 2740906 - 2741024
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||||||| |||||||||| |||||||||||||| ||| ||| ||||||| |||||    
T  2740906 atgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtggtagtttagggtttacaaattgttagattacctagtt 2741005  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  2741006 gtttgaaaattgcacacta 2741024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 766 - 884
Target Start/End: Original strand, 13272061 - 13272179
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||||||| |||||||||| |||||||||||||| | | ||| ||||||| |||||    
T  13272061 atgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtggtagtttagggtttacatattgttagattacctagtt 13272160  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  13272161 gtttgaaaattgcacacta 13272179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 372 - 507
Target Start/End: Complemental strand, 30491865 - 30491730
Alignment:
Q  372 ctcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaa 471  Q
    ||||||| |||||||| | ||||||||  ||||||||| ||| |||||||||| | |||  ||||||||||||||||||||||||||||||||||| |||    
T  30491865 ctcattacccaaatgaattcgctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaacttgcgtagtgtgagttaacatgcgctagttataa 30491766  T
Q  472 gagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    |   ||| |  |||||||||||||| |||| |||||    
T  30491765 ggagaacttaacttaagtcacgcagagtgagttaag 30491730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 361 - 507
Target Start/End: Complemental strand, 33144265 - 33144119
Alignment:
Q  361 ttagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgc 460  Q
    ||||||||||  |||||| |||||  ||  ||||||||   |||||||||| || ||||| ||| | |||  ||||||||||||| ||||||||||||||    
T  33144265 ttagaattctgttcattacccaaacaatatcgctcattcctaaagtaaatgaccgaaatgcccctacgcatgttaacttgcgtagggtgagttaacatgc 33144166  T
Q  461 gctagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    ||||||| ||||   |||||  |||||||||||| ||||||||||||    
T  33144165 gctagttataaggagaacataacttaagtcacgctgcgtgacttaag 33144119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 607 - 677
Target Start/End: Original strand, 13271902 - 13271972
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||||||||||||||||||| | |||| |  ||||||||||||||||||||| ||||  |||||||    
T  13271902 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgattaccctacttc 13271972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 944 - 981
Target Start/End: Original strand, 6702916 - 6702953
Alignment:
Q  944 tgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6702916 tgtaattagttagagctatgtttgttaatgttgatgat 6702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 676
Target Start/End: Complemental strand, 22553199 - 22553127
Alignment:
Q  604 gaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactactt 676  Q
    |||||||| |||||||| |||||||||| | |||| |  ||||||||||||||||||||| ||||| ||||||    
T  22553199 gaatttcatcattcttgtgccattcaaagccaatttctaccacaatatcaagtaagtgatgattatcctactt 22553127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 750 - 857
Target Start/End: Complemental strand, 24211286 - 24211179
Alignment:
Q  750 ttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaat 849  Q
    |||||||||||   ||| ||| |||| |||||| |||| ||||||||||| |  |||||||||||||| || ||||||| |||||||  ||||||||| |    
T  24211286 ttgcatgttaatttttaggatagttactgatgaattaagttaggaattgtagtttagatgttgtttagagtgcaatgtggtagtttatagtttagaaatt 24211187  T
Q  850 gtaagatt 857  Q
    || |||||    
T  24211186 gttagatt 24211179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 364 - 472
Target Start/End: Original strand, 5504736 - 5504844
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||||||||||| |||||   |  ||||||||   |||||||| ||| |||||| | | | |||  ||||||||||||| |||||||||||||||||    
T  5504736 gaattctactcattacccaaacactatcgctcattcctaaagtaaaagtcgaaaatgcctctacgcatgttaacttgcgtagcgtgagttaacatgcgct 5504835  T
Q  464 agttgtaag 472  Q
    |||| ||||    
T  5504836 agttataag 5504844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 6269236 - 6269296
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtccc 424  Q
    ||||||| |||||||||||||   |  ||||||||||||| ||||||||||||||||||||    
T  6269236 gaattctgctcattatccaaacagtatcgctcattttcaatgtaaatgtccaaaatgtccc 6269296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 34017697 - 34017650
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatg 411  Q
    ||||||| |||||||  |||||| ||||||||||||||||||||||||    
T  34017697 gaattctgctcattactcaaatggttccgctcattttcaaagtaaatg 34017650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 607 - 677
Target Start/End: Original strand, 2740745 - 2740815
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||||||||  ||||||||| | |||| |  ||||||||||||||||||||| ||||  |||||||    
T  2740745 tttcaccattcttgtaccattcaaagccaatttctcccacaatatcaagtaagtgatgattaccctacttc 2740815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 36581165 - 36581111
Alignment:
Q  361 ttagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtcca 415  Q
    |||||||||| ||||||||  ||||||||||| |||||  |||||||||||||||    
T  36581165 ttagaattctgctcattatttaaatgattccgttcattcccaaagtaaatgtcca 36581111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 768 - 857
Target Start/End: Original strand, 8431209 - 8431298
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagatt 857  Q
    |||||||||| |||| |||| |||| |||||| |  |  |||||||||||| | ||||| |||||||| ||||||||||| ||| |||||    
T  8431209 gattgttagtaatgaattaagttagaaattgtagtttgaatgttgtttaggatgcaatgcgatagttttgggtttagaaattgttagatt 8431298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 7e-61; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 747 - 906
Target Start/End: Complemental strand, 39688493 - 39688334
Alignment:
Q  747 gtcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaa 846  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  39688493 gtcttggatgttaaagattatgattgctagtgatgatttaacttaggaattgttgtttagatgttgtttagggtacaatgtggtagtttagggtttagaa 39688394  T
Q  847 aatgtaagattacatagttgtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||| |||||||| ||||    
T  39688393 aatgtcagattacacagttgtttgaaaaatgcacactacgtgttcggtgaaatgtctcaa 39688334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 556 - 677
Target Start/End: Complemental strand, 39688684 - 39688563
Alignment:
Q  556 cctccattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaag 655  Q
    |||||||||| |||||||||||||||| ||| |||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39688684 cctccatttttcaacttttcaaaaaacgaaaatttcacccccaaatccgaatttcaccattcttgcgccattcaaaccaaatttcgtccacaatatcaag 39688585  T
Q  656 taagtgattattatactacttc 677  Q
    ||||||||| ||||||||||||    
T  39688584 taagtgattgttatactacttc 39688563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 766 - 884
Target Start/End: Complemental strand, 34440403 - 34440285
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||||||||| |||||||||| |||||||||||||| ||| ||| ||||||| |||||    
T  34440403 atgattgttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtggtagtttagggtttacaaattgttagattacctagtt 34440304  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  34440303 gtttgaaaattgcacacta 34440285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 766 - 843
Target Start/End: Original strand, 53630130 - 53630207
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggttta 843  Q
    ||||||||||||||||| |||| |||||||||||||  |||||||||||||| |||||||||| ||||||||||||||    
T  53630130 atgattgttagtgatgaattaatttaggaattgttgtttagatgttgtttagagtacaatgtggtagtttagggttta 53630207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 363 - 507
Target Start/End: Complemental strand, 44836557 - 44836413
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgc 462  Q
    |||||||| ||||||||| ||||| ||||||||||||  |||||||||||||| | || ||| | |||  ||||| || |||| |||| ||||  |||||    
T  44836557 agaattctgctcattatctaaatggttccgctcatttctaaagtaaatgtccatattgcccctacgcatgttaacatgtgtagcgtgacttaagttgcgc 44836458  T
Q  463 tagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    ||||| |||||||||| || |||||||  ||| ||||||||||||    
T  44836457 tagttataagagaaacgtgacttaagttgcgctgcgtgacttaag 44836413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 364 - 507
Target Start/End: Complemental strand, 15042084 - 15041941
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||| ||||||| |||||  ||  ||||||||  ||||||||| ||| |||||| ||| | |||  ||||||||||||| |||||||||||||||||    
T  15042084 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgtagcgtgagttaacatgcgct 15041985  T
Q  464 agttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    |||| ||||   |||||  ||||||| ||||||||||| |||||    
T  15041984 agttataaggagaacataacttaagttacgcagcgtgagttaag 15041941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 931 - 981
Target Start/End: Complemental strand, 39688312 - 39688262
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39688312 ggattgttaatgatgtaattagttagagctatgtttgttaatgttgatgat 39688262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 391 - 507
Target Start/End: Complemental strand, 34086891 - 34086775
Alignment:
Q  391 cgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtc 490  Q
    ||||||||  ||||||||| ||| |||||| ||| | |||  ||||||||||||| ||||||||||||||||||||| ||||   ||| |  ||||||||    
T  34086891 cgctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgtagcgtgagttaacatgcgctagttataaggagaacgtaacttaagtc 34086792  T
Q  491 acgcagcgtgacttaag 507  Q
    ||||||||||| |||||    
T  34086791 acgcagcgtgagttaag 34086775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 768 - 857
Target Start/End: Complemental strand, 2811523 - 2811434
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagatt 857  Q
    ||||||||||||||| |||| ||||||||||| |  ||||||||||||||  | ||||||| |||||||||||||| ||| ||| |||||    
T  2811523 gattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagaatgcaatgtggtagtttagggtttaaaaattgttagatt 2811434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 768 - 857
Target Start/End: Complemental strand, 41071308 - 41071219
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagatt 857  Q
    ||||||||||||||| |||| ||| ||||||| |  |||||||| ||||| || ||||||| |||||||||||||||||| ||| |||||    
T  41071308 gattgttagtgatgaattaagttaagaattgtagtttagatgttatttagagtgcaatgtggtagtttagggtttagaaattgttagatt 41071219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 391 - 507
Target Start/End: Original strand, 19866760 - 19866876
Alignment:
Q  391 cgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtc 490  Q
    ||||||||  ||||||||| ||| |||||| ||| | |||  ||||||||||||| ||||||||||||||||||||| ||||   ||| |  ||||||||    
T  19866760 cgctcattcccaaagtaaaagtcaaaaatgcccctacgcatgttaacttgcgtagcgtgagttaacatgcgctagttataaggagaacgtaacttaagtc 19866859  T
Q  491 acgcagcgtgacttaag 507  Q
    ||||| ||||| |||||    
T  19866860 acgcaacgtgagttaag 19866876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 364 - 455
Target Start/End: Complemental strand, 6162760 - 6162669
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaa 455  Q
    ||||||| ||||||| ||||||| |||||||||||  ||||||||| |||||||||| ||| | |||  ||||| ||||||| |||| ||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 6162669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 391 - 494
Target Start/End: Complemental strand, 53827712 - 53827609
Alignment:
Q  391 cgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaagagaaacatgtcttaagtc 490  Q
    ||||||||  |||||||||||||||||||| ||| | |||  ||||| ||||||| |||| ||||  |||||||||| |||||| ||||   ||||||||    
T  53827712 cgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgcgctagttataagaggaacacaacttaagtc 53827613  T
Q  491 acgc 494  Q
    ||||    
T  53827612 acgc 53827609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 768 - 857
Target Start/End: Original strand, 7627146 - 7627235
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagatt 857  Q
    ||||||||||||||| |||| ||||||||||| |  ||||||||||||||  | || ||||  | ||||||||||||||| ||| |||||    
T  7627146 gattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagaatgcattgtggaaatttagggtttagaaattgttagatt 7627235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 4969870 - 4969930
Alignment:
Q  359 aattagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaat 419  Q
    |||||||||||| ||||||| ||||||| |||||||||||  ||||||||| ||| |||||    
T  4969870 aattagaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaat 4969930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 472
Target Start/End: Complemental strand, 7667013 - 7666932
Alignment:
Q  391 cgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaag 472  Q
    ||||||||  |||| |||| ||| |||||| ||| | |||  ||||||||| ||| ||||||||||||||||||||| ||||    
T  7667013 cgctcattcccaaaataaaagtcaaaaatgcccctacgcatgttaacttgcatagcgtgagttaacatgcgctagttataag 7666932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 3e-60; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 495 - 677
Target Start/End: Original strand, 9384696 - 9384878
Alignment:
Q  495 agcgtgacttaagatgcactacgtcatttaagtcatttcccagcaacacagaaccgccattcctccattttgcaacttttcaaaaaacaaaattttcacc 594  Q
    ||||||| |||| |||| |||||| | |||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||||| |||||||||||    
T  9384696 agcgtgagttaacatgcgctacgttacttaagtcagtttccagcaacacaaaacctccattcatccatttttcaacttttcaaaaaacgaaattttcacc 9384795  T
Q  595 ctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9384796 ctcaaatccgaatttcaccattcttgcgccattcaaaccaaatttcgtccacaatatcaagtaagtgactattatactacttc 9384878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 754 - 866
Target Start/End: Original strand, 9384956 - 9385068
Alignment:
Q  754 atgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaa 853  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9384956 atgttaaagattatgattgttagtgatgatttaacttaggaattgttgtttagatgttgtttagggtacaatgtggtagtttagggtttagaaaatgtaa 9385055  T
Q  854 gattacatagttg 866  Q
    |||||||||||||    
T  9385056 gattacatagttg 9385068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 766 - 884
Target Start/End: Original strand, 14094929 - 14095047
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||| |||| ||| ||||||| |||||    
T  14094929 atgattgttagtgatgagttaacttaggaattgttgtttagatgttgtttagagtacaatgtggtagtttagggttttgaaattgttagattacctagtt 14095028  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  14095029 gtttgaaaactgcacacta 14095047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 766 - 884
Target Start/End: Original strand, 10529264 - 10529382
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||||||| |||||||||| |||||||||||||| ||| ||| ||||||| |||||    
T  10529264 atgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtggtagtttagggtttacaaattgttagattacctagtt 10529363  T
Q  866 gtttgaaaaatgcacacta 884  Q
    |||| |||| |||||||||    
T  10529364 gtttaaaaattgcacacta 10529382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 365 - 464
Target Start/End: Original strand, 9384617 - 9384716
Alignment:
Q  365 aattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgcta 464  Q
    |||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||    
T  9384617 aattctgctcattattcaaatggttccgctcattttcaaaataaatgtccaaaatgtccctacgcaacttaacatgcgtagcgtgagttaacatgcgcta 9384716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 363 - 592
Target Start/End: Complemental strand, 23559062 - 23558852
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgc 462  Q
    |||||||| ||||||||||||||| |||||||||||  ||| ||||| |||||||||| ||| | |||  ||||||| ||||| |||||||||||||| |    
T  23559062 agaattctgctcattatccaaatggttccgctcattgccaaggtaaaagtccaaaatgcccctacgcatgttaacttacgtagcgtgagttaacatgccc 23558963  T
Q  463 tagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaagatgcactacgtcatttaagtcatttcccagcaacacagaaccgccattcctccat 562  Q
    ||||| |||| | |                   |||||||||||| ||| |||||| | |||||||| || |||||||||||||||| ||||||||||||    
T  23558962 tagttataagggta-------------------gcgtgacttaagttgcgctacgttacttaagtcagtttccagcaacacagaacctccattcctccat 23558882  T
Q  563 tttgcaacttttcaaaaaacaaaattttca 592  Q
    ||  |||||||||||||||| |||||||||    
T  23558881 ttctcaacttttcaaaaaacgaaattttca 23558852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 766 - 846
Target Start/End: Complemental strand, 37230052 - 37229972
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaa 846  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||||||| |||||||||| |||||||||||||||||    
T  37230052 atgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtggtagtttagggtttagaa 37229972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 804 - 884
Target Start/End: Complemental strand, 37229976 - 37229896
Alignment:
Q  804 tagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgtttgaaaaatgcacacta 884  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||| ||| | ||||| |||||||||||||| |||||||||    
T  37229976 tagaagttgtttagagtacaatgtggtagtttagggtttacaaattgttaaattacctagttgtttgaaaattgcacacta 37229896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 364 - 472
Target Start/End: Original strand, 34276192 - 34276300
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||| ||||||| |||||  ||  |||| |||| ||||||||| ||  |||||| ||| |||||  ||||||||||||| |||||||||||||||||    
T  34276192 gaattctgctcattacccaaacaatatcgcttatttccaaagtaaaagtaaaaaatgcccctatgcatgttaacttgcgtagcgtgagttaacatgcgct 34276291  T
Q  464 agttgtaag 472  Q
    |||| ||||    
T  34276292 agttataag 34276300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 677
Target Start/End: Original strand, 10529048 - 10529171
Alignment:
Q  554 ttcctccattttgcaacttttcaaaaaacaaaattttcaccctcaaact-cgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatc 652  Q
    |||||| ||||| |||||| || ||| || |||||||| ||||| || | ||| ||||||||||||||||||||| ||| | |||| |  ||||||||||    
T  10529048 ttcctcaattttccaacttctccaaacacgaaattttc-ccctccaagtgcgattttcaccattcttgcgccatttaaagccaatttctcccacaatatc 10529146  T
Q  653 aagtaagtgattattatactacttc 677  Q
    ||||||||||| ||||  |||||||    
T  10529147 aagtaagtgatgattaccctacttc 10529171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 602 - 677
Target Start/End: Complemental strand, 37230216 - 37230141
Alignment:
Q  602 tcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    |||| |||||||||||||||| |||||||| | |||| |  ||||||||||||||||||||| ||||  |||||||    
T  37230216 tcgattttcaccattcttgcgtcattcaaagccaatttctcccacaatatcaagtaagtgatgattaccctacttc 37230141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 37687390 - 37687335
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaat 419  Q
    ||||||| || |||| ||||||| |||||||||||| |||||||||||||||||||    
T  37687390 gaattctgcttattacccaaatggttccgctcatttccaaagtaaatgtccaaaat 37687335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 14094768 - 14094829
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||| ||||||||||||||||||| | |||| |  ||||||||||||||||||||| ||||    
T  14094768 tttcatcattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgatta 14094829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 613 - 677
Target Start/End: Original strand, 22721282 - 22721346
Alignment:
Q  613 cattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    |||||||||| |||||||| | |||| |  ||||||||||||||||||||| ||||| |||||||    
T  22721282 cattcttgcgtcattcaaagccaatttctcccacaatatcaagtaagtgatgattatcctacttc 22721346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 835
Target Start/End: Original strand, 16995655 - 16995722
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagttt 835  Q
    ||||||||||||||| |||| ||||||||||| |  |||||||||||||| || ||||| | ||||||    
T  16995655 gattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtgcaatgaggtagttt 16995722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 33220024 - 33220078
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaat 419  Q
    ||||||| ||||||||||||||| ||||||||| || |||||||||||| ||||||    
T  33220024 gaattctgctcattatccaaatggttccgctca-ttccaaagtaaatgttcaaaat 33220078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 28703879 - 28703937
Alignment:
Q  362 tagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatg 420  Q
    ||||||||| ||||||| |||||| ||  |||||||||| ||| |||||||||||||||    
T  28703879 tagaattctgctcattacccaaataatatcgctcattttaaaaataaatgtccaaaatg 28703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 20520600 - 20520661
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||| |||||||| |||||||||| | |||| | |||| ||||||||||||||||| ||||    
T  20520600 tttcatcattcttgtgccattcaaagccaatttcttccaaaatatcaagtaagtgatgatta 20520661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 766 - 906
Target Start/End: Complemental strand, 9948 - 9808
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    |||||||||||||| || ||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  9948 atgattgttagtgacgaattaacttaggaattgttgtttagatgttggttagggtacaatgtggtagtttagggtttagaaattgttagattacatagtt 9849  T
Q  866 gtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    ||||||||| |||||||||||| |||| | |||||| ||||    
T  9848 gtttgaaaattgcacactacgtgttcggtaaaatgtctcaa 9808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 766 - 906
Target Start/End: Complemental strand, 41799702 - 41799563
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||  |  |||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  41799702 atgattgttagtgaccaaataacttaggaattgttgtttagatgttgtttagggtacaatgtggtagtttagggtttagaaaatgttagattacatagtt 41799603  T
Q  866 gtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    ||||||||||||||| |||||| |||| |||||||| ||||    
T  41799602 gtttgaaaaatgcac-ctacgtgttcggtgaaatgtctcaa 41799563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 766 - 885
Target Start/End: Complemental strand, 8525225 - 8525106
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||| |||||||| || ||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||||    
T  8525225 atgatggttagtgacgaattaacttaggaattgttgtttagatgttgtttagggtacaatgtggtagtttagggtttagaaattgctagattacatagtt 8525126  T
Q  866 gtttgaaaaatgcacactac 885  Q
    ||||||||| ||| ||||||    
T  8525125 gtttgaaaattgcgcactac 8525106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 766 - 884
Target Start/End: Original strand, 38455409 - 38455527
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||||||||| |||||||||| |||||||||||||| ||| ||| ||||||| |||||    
T  38455409 atgattgttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtggtagtttagggtttacaaattgttagattacctagtt 38455508  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  38455509 gtttgaaaattgcacacta 38455527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 764 - 884
Target Start/End: Original strand, 13553111 - 13553231
Alignment:
Q  764 ttatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatag 863  Q
    |||||||||||||||| || ||||||||||||||||||  |||||||| ||||| |||||||||| |||||||  ||||| ||| ||| ||||||| |||    
T  13553111 ttatgattgttagtgacgaattaacttaggaattgttgtttagatgttatttagagtacaatgtggtagtttaaagtttaaaaattgttagattacctag 13553210  T
Q  864 ttgtttgaaaaatgcacacta 884  Q
    ||||||||||| || ||||||    
T  13553211 ttgtttgaaaattgtacacta 13553231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 768 - 880
Target Start/End: Complemental strand, 21066016 - 21065904
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgt 867  Q
    ||||||||||| ||| |||| ||||||| |||||  |||||||||||||| |||||||||| |||||||||||||||||| ||| ||||| | |||||||    
T  21066016 gattgttagtggtgaattaagttaggaactgttgtttagatgttgtttagagtacaatgtggtagtttagggtttagaaattgttagatttcttagttgt 21065917  T
Q  868 ttgaaaaatgcac 880  Q
     |||||| |||||    
T  21065916 atgaaaattgcac 21065904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 588 - 676
Target Start/End: Original strand, 13552936 - 13553024
Alignment:
Q  588 tttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactactt 676  Q
    |||||||| ||||  ||||||||| ||||||||||||||| ||| | |||| |||||||||||||||||||||||| ||||| ||||||    
T  13552936 tttcacccccaaatccgaatttcatcattcttgcgccatttaaagccaatttcgtccacaatatcaagtaagtgatgattatcctactt 13553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 358 - 529
Target Start/End: Complemental strand, 20379752 - 20379581
Alignment:
Q  358 gaattagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaaca 457  Q
    |||| |||||| | ||||||||| ||||| |||||||||||  ||||||||| |||||||||| ||| | |||||||||  ||| ||| |||| ||||      
T  20379752 gaataagaattatgctcattatctaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcaacttaatatgcatagcgtgacttaagt 20379653  T
Q  458 tgcgctagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaagatgcactacgtcatttaagtca 529  Q
    ||| |||||| |||||||||| |   ||||||||||||  |||||||||| ||| | |||| | ||||||||    
T  20379652 tgcactagttataagagaaacgtaagttaagtcacgcaatgtgacttaagttgcgccacgtgacttaagtca 20379581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 367 - 494
Target Start/End: Complemental strand, 26604248 - 26604121
Alignment:
Q  367 ttctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagt 466  Q
    |||| |||||||  |||||| ||||||||||| |||||||||| ||  |||||| ||| | |||  ||||||| ||||| ||||||||||||||||||||    
T  26604248 ttctgctcattactcaaatggttccgctcattctcaaagtaaaagtttaaaatgcccctacgcatgttaacttacgtagcgtgagttaacatgcgctagt 26604149  T
Q  467 tgtaagagaaacatgtcttaagtcacgc 494  Q
    | || ||||||| |  ||||||||||||    
T  26604148 tatacgagaaacgtaacttaagtcacgc 26604121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 584 - 667
Target Start/End: Complemental strand, 41799884 - 41799801
Alignment:
Q  584 aaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaa-ccaaattccgtccacaatatcaagtaagtgattatt 667  Q
    |||||||||||| ||||  | || |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  41799884 aaattttcacccccaaatccaaaattcatcattcttgcgccattcaaagccaaattc-gtccacaatatcaagtaagtgattatt 41799801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 669
Target Start/End: Complemental strand, 8525431 - 8525322
Alignment:
Q  560 cattttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaag 659  Q
    |||||| ||||||||| ||| || | | || |||||  ||| |||||||||| || |||||||||||||||| |||||| ||||||||| |||| |||||    
T  8525431 cattttccaacttttccaaacacgagaattgcaccccaaaattcgaatttcatcaatcttgcgccattcaaagcaaatttcgtccacaacatcatgtaag 8525332  T
Q  660 tgattattat 669  Q
    |||| |||||    
T  8525331 tgatgattat 8525322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 30359727 - 30359834
Alignment:
Q  388 ttccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagtt-aacatgcgctagttgtaagagaaacatgtctta 486  Q
    |||||||||||  ||||||||| |||||||| ||||| ||||   ||||||| ||||| ||| ||| |||||||||||||| |||||||||| |  ||||    
T  30359727 ttccgctcattcccaaagtaaaagtccaaaacgtccctatgcttgttaacttacgtagcgtgggtttaacatgcgctagttataagagaaacgtaactta 30359826  T
Q  487 agtcacgc 494  Q
    ||||||||    
T  30359827 agtcacgc 30359834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 364 - 507
Target Start/End: Complemental strand, 44552780 - 44552637
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgct 463  Q
    ||||||| ||||||| |||||  ||  |||||||| |||||||||| ||| ||||||  || | |||  ||||||||||||  |||||||||||||||||    
T  44552780 gaattctgctcattacccaaacaatatcgctcattctcaaagtaaaagtcgaaaatgctcctacgcatgttaacttgcgtaacgtgagttaacatgcgct 44552681  T
Q  464 agttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    |||| || |   ||| || |||||||||||||| |||| |||||    
T  44552680 agttatagggtgaacgtgacttaagtcacgcagtgtgagttaag 44552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 603 - 677
Target Start/End: Complemental strand, 8231807 - 8231734
Alignment:
Q  603 cgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||| ||||||||||||||||||| | |||| |  ||||| |||||||||||||||||||| ||||||||    
T  8231807 cgaatttcatcattcttgcgccattcaaagccaatttctcccaca-tatcaagtaagtgattattaaactacttc 8231734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 607 - 677
Target Start/End: Original strand, 38455249 - 38455319
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    ||||||||||||||||||||||||| | |||| |  ||||||||||||||||||||| ||||  |||||||    
T  38455249 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgattaccctacttc 38455319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 768 - 880
Target Start/End: Original strand, 12625296 - 12625408
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagttgt 867  Q
    ||||||||||||||| |||| |||  |||||| |  |||||||| ||||| |||  ||||| ||||||| | |||||||| ||| ||||| | |||||||    
T  12625296 gattgttagtgatgaattaagttataaattgtagtttagatgttatttagagtaatatgtggtagtttatgatttagaaattgttagatttcttagttgt 12625395  T
Q  868 ttgaaaaatgcac 880  Q
    ||||||| |||||    
T  12625396 ttgaaaattgcac 12625408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 837
Target Start/End: Complemental strand, 16728740 - 16728672
Alignment:
Q  769 attgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttag 837  Q
    |||||||||||||| |||| ||||||||||| |  |||||||||||||| || ||||||| ||||||||    
T  16728740 attgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtccaatgtggtagtttag 16728672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 837
Target Start/End: Complemental strand, 17705812 - 17705744
Alignment:
Q  769 attgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttag 837  Q
    |||||||||||||| |||| ||||||||||| |  |||||||||||||| || ||||||| ||||||||    
T  17705812 attgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtccaatgtggtagtttag 17705744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 38790881 - 38790940
Alignment:
Q  361 ttagaattctactcattatccaaatgattccgctcatttt-caaagtaaatgtccaaaat 419  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||||||| |||||||||    
T  38790881 ttagaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaat 38790940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 942 - 981
Target Start/End: Complemental strand, 41799530 - 41799491
Alignment:
Q  942 gatgtaattagttagagctatgtttgttaatgttgatgat 981  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  41799530 gatgtaattagatagagctatgtttgttaatgttgatgat 41799491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 5060847 - 5060893
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaa 409  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||    
T  5060847 agaattctactcattatccaaatggttccgctcattcccaaagtaaa 5060893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 769 - 843
Target Start/End: Complemental strand, 17715797 - 17715723
Alignment:
Q  769 attgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggttta 843  Q
    |||||||||||||| |||| ||||||||||| |  || ||||||||||| || ||||||| ||||||||| ||||    
T  17715797 attgttagtgatgaattaagttaggaattgtagtttatatgttgtttagagtccaatgtggtagtttaggattta 17715723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 931 - 975
Target Start/End: Original strand, 13553277 - 13553321
Alignment:
Q  931 ggattgttaaggatgtaattagttagagctatgtttgttaatgtt 975  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||    
T  13553277 ggattgttaatgatgtaattagttagaaatatgtttgttaatgtt 13553321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 847
Target Start/End: Complemental strand, 16728674 - 16728631
Alignment:
Q  804 tagatgttgtttagggtacaatgtgatagtttagggtttagaaa 847  Q
    |||||||||||||| || ||||||| ||||||||||||||||||    
T  16728674 tagatgttgtttagagtccaatgtggtagtttagggtttagaaa 16728631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 847
Target Start/End: Complemental strand, 17705746 - 17705703
Alignment:
Q  804 tagatgttgtttagggtacaatgtgatagtttagggtttagaaa 847  Q
    |||||||||||||| || ||||||| ||||||||||||||||||    
T  17705746 tagatgttgtttagagtccaatgtggtagtttagggtttagaaa 17705703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 828
Target Start/End: Original strand, 29033520 - 29033579
Alignment:
Q  769 attgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtg 828  Q
    |||||||||||||| ||||||||||||||||||  || | ||| ||||| ||||||||||    
T  29033520 attgttagtgatgaattaacttaggaattgttgtttataagttatttagagtacaatgtg 29033579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 31853349 - 31853294
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaat 419  Q
    ||||||| ||||||||||||||  ||||||||||||| ||| |||||| |||||||    
T  31853349 gaattctgctcattatccaaatagttccgctcatttttaaaataaatgaccaaaat 31853294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 766 - 884
Target Start/End: Original strand, 5271 - 5389
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||| |||| ||| ||||||| |||||    
T  5271 atgattgttagtgatgagttaacttaggaattgttgtttagatgttgtttagagtacaatgtggtagtttagggttttgaaattgttagattacctagtt 5370  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  5371 gtttgaaaactgcacacta 5389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 766 - 884
Target Start/End: Complemental strand, 1492 - 1374
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| |||||||| |||||||||  |||||||||||||| |||||||||| |||||||||||||| ||| ||| ||||||| |||||    
T  1492 atgattgttagtgatgaattaacttatgaattgttgtttagatgttgtttagagtacaatgtggtagtttagggtttacaaattgttagattacctagtt 1393  T
Q  866 gtttgaaaaatgcacacta 884  Q
     |||||||| | |||||||    
T  1392 ttttgaaaattccacacta 1374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 1651 - 1590
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||| |||||||||||||||||||   |||| | |||| ||||||||||||||||| ||||    
T  1651 tttcatcattcttgcgccattcaaagtcaatttcttccaaaatatcaagtaagtgatgatta 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 766 - 881
Target Start/End: Original strand, 35007094 - 35007209
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||||||||| |||||||||| || ||||||||||| |||  || ||||||| |||||    
T  35007094 atgattgttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtggtaatttagggtttacaaacagttagattacctagtt 35007193  T
Q  866 gtttgaaaaatgcaca 881  Q
    ||||||||| ||||||    
T  35007194 gtttgaaaattgcaca 35007209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 747 - 906
Target Start/End: Original strand, 24122472 - 24122630
Alignment:
Q  747 gtcttgcatgttaaagattatgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaa 846  Q
    |||||||||||||    ||| ||||||||||||||||||||||||||||||||    || ||||||||||| ||  |||||| |||||||||||||||||    
T  24122472 gtcttgcatgttagtttttaggattgttagtgatgatttaacttaggaattgtactttaaatgttgtttagagtgaaatgtggtagtttagggtttagaa 24122571  T
Q  847 aatgtaagattacatagttgtttgaaaaatgcacactacgtattcgatgaaatgtttcaa 906  Q
    | ||| ||||| | |||||||||||||| ||||| ||| || || ||| |||||| ||||    
T  24122572 attgttagatt-cttagttgtttgaaaattgcactctatgtgtttgataaaatgtctcaa 24122630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 587 - 675
Target Start/End: Original strand, 24122311 - 24122399
Alignment:
Q  587 ttttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactact 675  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||| | |||| || ||||||||||||||||||||| ||||| |||||    
T  24122311 ttttcacccccaaattcgaatttcacgattcttgcgccattcaaagctaatttcgaccacaatatcaagtaagtgatgattattctact 24122399  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 364 - 455
Target Start/End: Complemental strand, 35060973 - 35060882
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaa 455  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||| | |||  ||||| ||||||| |||| ||||    
T  35060973 gaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 35060882  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 766 - 884
Target Start/End: Complemental strand, 6288007 - 6287900
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||||||||| ||||||||||||||           ||||||||| |||||||||| |||||||||||||| ||| ||| ||||||| || ||    
T  6288007 atgattgttagtgatgaattaacttaggaatt-----------gttgtttagagtacaatgtggtagtttagggtttacaaattgttagattacctattt 6287919  T
Q  866 gtttgaaaaatgcacacta 884  Q
    ||||||||| |||||||||    
T  6287918 gtttgaaaattgcacacta 6287900  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 770 - 857
Target Start/End: Original strand, 31020815 - 31020902
Alignment:
Q  770 ttgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagatt 857  Q
    ||||||||||||| |||| ||||||||||| |  |||||||||||||| || || |||| |||||||||||||||||| ||| |||||    
T  31020815 ttgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtgcattgtggtagtttagggtttagaaattgttagatt 31020902  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 598
Target Start/End: Original strand, 25400900 - 25400997
Alignment:
Q  501 acttaagatgcactacgtcatttaagtcatttcccagcaacacagaaccgccattcctccattttgcaacttttcaaaaaacaaaattttcaccctca 598  Q
    |||||||||||  ||||| | |||||||| |  ||||||||||| ||||  ||||| |||||||| ||||||||||||||||  ||||||||||||||    
T  25400900 acttaagatgcgttacgttacttaagtcagtctccagcaacacaaaacctacattcatccatttttcaacttttcaaaaaacgtaattttcaccctca 25400997  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 372 - 472
Target Start/End: Original strand, 17436044 - 17436144
Alignment:
Q  372 ctcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagttgtaa 471  Q
    |||||||| |||||| |||||||||||  ||||||||| ||| |||||| | | | |||  ||||||||||||| || |||||||||||||||||| |||    
T  17436044 ctcattattcaaatggttccgctcattcccaaagtaaaagtctaaaatgcctctacgcatgttaacttgcgtagcgtaagttaacatgcgctagttataa 17436143  T
Q  472 g 472  Q
    |    
T  17436144 g 17436144  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 766 - 880
Target Start/End: Complemental strand, 18790954 - 18790840
Alignment:
Q  766 atgattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaaatgtaagattacatagtt 865  Q
    ||||||||||  ||||| |||| ||||||||||     |||||||||||||| ||  |||||| ||||||| |||||||||| ||| ||||| | |||||    
T  18790954 atgattgttaaagatgaattaagttaggaattgcattttagatgttgtttagagtgaaatgtgctagtttatggtttagaaattgttagatttcttagtt 18790855  T
Q  866 gtttgaaaaatgcac 880  Q
    ||||||||| |||||    
T  18790854 gtttgaaaattgcac 18790840  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 768 - 847
Target Start/End: Original strand, 19222657 - 19222736
Alignment:
Q  768 gattgttagtgatgatttaacttaggaattgttgcgtagatgttgtttagggtacaatgtgatagtttagggtttagaaa 847  Q
    ||||||||||||||| |||| ||||||||| | |  |||||||||||||| ||   ||||| ||||||||||||||||||    
T  19222657 gattgttagtgatgaattaagttaggaattatagtttagatgttgtttagagtgatatgtggtagtttagggtttagaaa 19222736  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 31522613 - 31522534
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgt 443  Q
    ||||||| ||||||| ||||||| |||||||||||  ||||||||||| || ||||| ||| | |||| |||||||||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaacttgcgt 31522534  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 19222486 - 19222566
Alignment:
Q  597 caaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    |||| |||||||||| ||||||||||||||||||| | |||| |  ||||||||| || ||||| || ||||| |||||||    
T  19222486 caaattcgaatttcatcattcttgcgccattcaaagccaatttcacccacaatataaaataagtaatgattatcctacttc 19222566  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 610 - 668
Target Start/End: Complemental strand, 6288164 - 6288106
Alignment:
Q  610 caccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    |||||||||||| ||||||||| | |||| |  ||||||||||||||||||||| ||||    
T  6288164 caccattcttgcaccattcaaagccaatttctcccacaatatcaagtaagtgatgatta 6288106  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 14153351 - 14153409
Alignment:
Q  361 ttagaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaat 419  Q
    |||||||||| ||||||| ||||||||||  |||||||  ||||||||||| |||||||    
T  14153351 ttagaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaat 14153409  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 32275841 - 32275771
Alignment:
Q  372 ctcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcg 442  Q
    ||||||||||||||| |||||||||||  ||||||||||| |  ||||| ||| |||||| ||||| ||||    
T  32275841 ctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgcaagttaacatgcg 32275771  T

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Target: scaffold1763 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 507
Target Start/End: Complemental strand, 443 - 301
Alignment:
Q  363 agaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgc 462  Q
    |||||| | ||| ||| ||||||| || ||||||||  |||||||||  ||| ||||| ||  |||||  ||||||| |||||||  ||||||||||| |    
T  443 agaattatgctctttacccaaatggtttcgctcattcccaaagtaaaaatcccaaatgcccttatgcatgttaacttacgtagtg--agttaacatgcac 346  T
Q  463 tagttgtaagagaaacatgtcttaagtcacgcagcgtgacttaag 507  Q
    ||||| |||||||||| |  |||||||||| ||||||||||||||    
T  345 tagttataagagaaacgtaacttaagtcacacagcgtgacttaag 301  T

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Target: scaffold0046 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 562 - 663
Target Start/End: Complemental strand, 75228 - 75127
Alignment:
Q  562 ttttgcaacttttcaaaaaacaaaattttcaccctcaaactcgaatttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtg 661  Q
    |||| |||||| |||||||||||||||||| ||  |||   ||| ||||||||||||||||||| ||||| | |||| |  |||||||||||||||||||    
T  75228 ttttccaacttctcaaaaaacaaaattttctcctccaagtgcgattttcaccattcttgcgccaatcaaagccaatttctcccacaatatcaagtaagtg 75129  T
Q  662 at 663  Q
    ||    
T  75128 at 75127  T

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Target: scaffold0010 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 607 - 677
Target Start/End: Complemental strand, 34625 - 34555
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattattatactacttc 677  Q
    |||||||||||||||||||||| || | |||| |  ||||||||||||||||||||| ||||| |||||||    
T  34625 tttcaccattcttgcgccattccaagccaatttctcccacaatatcaagtaagtgatgattatcctacttc 34555  T

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Target: scaffold1063 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 1475 - 1531
Alignment:
Q  364 gaattctactcattatccaaatgattccgctcattttcaaagtaaatgtccaaaatg 420  Q
    ||||||| ||||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  1475 gaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatg 1531  T

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Target: scaffold0695 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 1681 - 1620
Alignment:
Q  607 tttcaccattcttgcgccattcaaaccaaattccgtccacaatatcaagtaagtgattatta 668  Q
    ||||| ||||||||||||||||||| | |||| |  ||||||||||||||||||||| ||||    
T  1681 tttcatcattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgatta 1620  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 24416 - 24340
Alignment:
Q  391 cgctcattttcaaagtaaatgtccaaaatgtcccaatgcaacttaacttgcgtagtgtgagttaacatgcgctagtt 467  Q
    ||||||||  ||||||||| ||  |||||| ||| | |||  ||||||||||||| |||||||||||||||||||||    
T  24416 cgctcattcccaaagtaaaagtttaaaatgcccctacgcatgttaacttgcgtagcgtgagttaacatgcgctagtt 24340  T

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