View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_high_13 (Length: 322)
Name: NF21217_high_13
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 157 - 294
Target Start/End: Complemental strand, 27244046 - 27243909
Alignment:
| Q |
157 |
tcataaacactaagcagatgaattaaccaatgattcaaatcagtggaagtctttagattgatttttcaaccatcatcaagaaaacaatttgatgggatcg |
256 |
Q |
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| T |
27244046 |
tcataaacactaagcagatgaattaaccaatgattcaaatcagtggaagtccttagactgatttttcaaccatcatcaagaaaacaatttgatgggatcg |
27243947 |
T |
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| Q |
257 |
attgatcgatcaaatatcatttgtctctacatccttaa |
294 |
Q |
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| T |
27243946 |
attgatcgatcaaatatcatttgtctctacatccttaa |
27243909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27244204 - 27244144
Alignment:
| Q |
1 |
gtaacaatacatttgtttgctatctttcacgaaattattttcgttaaatacaacattttcg |
61 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27244204 |
gtaacaatacatttgttcgctatctttcacgaaattattttcgttatatacaacattttcg |
27244144 |
T |
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