View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21217_high_18 (Length: 260)

Name: NF21217_high_18
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21217_high_18
NF21217_high_18
[»] chr1 (3 HSPs)
chr1 (13-222)||(27215950-27216159)
chr1 (19-151)||(27222003-27222127)
chr1 (133-222)||(27221871-27221960)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 27216159 - 27215950
Alignment:
Q  13 gagaagaaaaagcaactaatttatatagtattcggaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttataaaaaataa 112  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27216159 gagaagaaaaagcaactaatttatatagtattcgtaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttagaaaaaataa 27216060  T
Q  113 atattaggtttttaaagttaattttatagggtagaatatgatgatgttgaatgattgatgcacataaaattataagaaaatcatcaaacaacctcaatat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  27216059 atattaggtttttaaagttaattttatagggtagaatatgatgatgttgaatgattgctacacataaaattataagaaaatcatcaaacaacctcaatat 27215960  T
Q  213 caacttcaga 222  Q
    ||||||||||    
T  27215959 caacttcaga 27215950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 27222127 - 27222003
Alignment:
Q  19 aaaaagcaactaatttatatagtattcggaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttataaaaaataaatatta 118  Q
    ||||| ||| |||| ||||||||||||| ||||||||    ||| || |||||||||||||||||||||| ||||||||||||||||||   ||||||||    
T  27222127 aaaaaacaagtaatatatatagtattcgtaaaataaa----aaaata-tttatatagtaatatattagtaatacaaagatcttataaaa---aaatatta 27222036  T
Q  119 ggtttttaaagttaattttatagggtagaatat 151  Q
    |||||||||||||||||||| || ||| |||||    
T  27222035 ggtttttaaagttaattttacagtgtacaatat 27222003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 27221960 - 27221871
Alignment:
Q  133 attttatagggtagaatatgatgatgttgaatgattgatgcacataaaattataagaaaatcatcaaacaacctcaatatcaacttcaga 222  Q
    ||||||||| ||| ||| |||||||||||||||||  || |||||||||||||||||||||| || || ||| |||||||||||||||||    
T  27221960 attttatagtgtacaatgtgatgatgttgaatgatctatacacataaaattataagaaaatcctctaaaaacatcaatatcaacttcaga 27221871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University