View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_high_20 (Length: 249)
Name: NF21217_high_20
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 44627856 - 44627639
Alignment:
| Q |
17 |
agaaatgatgaaaaatttggagaatgaatccaagaagaaacaagaactagtgcagttaatgctagtgccaagaagagagccaaaaattgagaagaacaag |
116 |
Q |
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| T |
44627856 |
agaaatgatgaaaaatttggagaatgaatccaagaagaaacaagaactagtgcagttaatgctagtgccaagaagagagccaaaaattgagaagaacaag |
44627757 |
T |
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| Q |
117 |
tggaagaagctttcatcttaataaaagtactcctatcttgattgattatactgctttgaattcaatgtgatgaagttggtgttcaagaaagaattaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627756 |
tggaagaagctttcatcttaataaaagtactcctatcttgattgattatactgctttgaattcaatgtgatgaagttggtgttcaagaaagaattaaaat |
44627657 |
T |
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| Q |
217 |
gggtgtgtatgtgtgtgt |
234 |
Q |
| |
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|||||||||||||||||| |
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| T |
44627656 |
gggtgtgtatgtgtgtgt |
44627639 |
T |
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