View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21217_high_21 (Length: 240)

Name: NF21217_high_21
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21217_high_21
NF21217_high_21
[»] chr7 (20 HSPs)
chr7 (1-213)||(9403393-9403591)
chr7 (1-213)||(37075858-37076056)
chr7 (1-212)||(34981603-34981800)
chr7 (1-213)||(40892032-40892230)
chr7 (1-213)||(586540-586738)
chr7 (1-85)||(3483075-3483159)
chr7 (1-213)||(12121342-12121540)
chr7 (88-213)||(24819526-24819651)
chr7 (91-213)||(36575650-36575772)
chr7 (1-157)||(21607994-21608136)
chr7 (87-214)||(20705759-20705886)
chr7 (87-214)||(20873803-20873930)
chr7 (91-154)||(31253050-31253113)
chr7 (2-63)||(27868667-27868728)
chr7 (2-58)||(22866157-22866213)
chr7 (97-205)||(27278440-27278548)
chr7 (165-213)||(27868806-27868854)
chr7 (1-72)||(24819453-24819524)
chr7 (1-72)||(36575777-36575848)
chr7 (1-85)||(31252974-31253058)
[»] chr4 (29 HSPs)
chr4 (1-213)||(6614302-6614500)
chr4 (1-212)||(15649336-15649533)
chr4 (1-213)||(18116650-18116849)
chr4 (1-213)||(23158418-23158616)
chr4 (1-213)||(36279471-36279669)
chr4 (1-203)||(51872441-51872629)
chr4 (103-213)||(22340423-22340533)
chr4 (87-207)||(8110746-8110866)
chr4 (103-213)||(29123707-29123816)
chr4 (88-213)||(17838802-17838927)
chr4 (2-85)||(50694136-50694219)
chr4 (98-212)||(24059482-24059596)
chr4 (2-56)||(29192726-29192780)
chr4 (2-79)||(4303590-4303667)
chr4 (2-79)||(15705948-15706025)
chr4 (5-53)||(4723310-4723358)
chr4 (2-85)||(3621326-3621409)
chr4 (2-72)||(17838929-17838999)
chr4 (2-82)||(29123823-29123903)
chr4 (2-58)||(34994483-34994539)
chr4 (2-58)||(36950958-36951014)
chr4 (87-154)||(12290620-12290687)
chr4 (2-85)||(12915548-12915631)
chr4 (2-85)||(17469506-17469589)
chr4 (103-213)||(4303470-4303580)
chr4 (103-213)||(15705828-15705938)
chr4 (88-145)||(12915620-12915677)
chr4 (2-79)||(22340336-22340413)
chr4 (97-145)||(25135116-25135164)
[»] chr2 (13 HSPs)
chr2 (1-213)||(23384599-23384797)
chr2 (1-213)||(27914869-27915067)
chr2 (1-213)||(21963164-21963362)
chr2 (88-213)||(32349703-32349828)
chr2 (88-213)||(30275719-30275843)
chr2 (88-213)||(38938301-38938426)
chr2 (2-85)||(22298669-22298752)
chr2 (2-85)||(33937157-33937240)
chr2 (98-212)||(20007337-20007451)
chr2 (3-72)||(32349632-32349701)
chr2 (1-48)||(30274485-30274532)
chr2 (2-57)||(38938229-38938284)
chr2 (2-58)||(1258217-1258273)
[»] chr3 (24 HSPs)
chr3 (1-213)||(17154075-17154273)
chr3 (1-213)||(53152353-53152551)
chr3 (1-213)||(23571889-23572087)
chr3 (3-154)||(32945649-32945786)
chr3 (1-213)||(3514440-3514638)
chr3 (87-213)||(9818888-9819014)
chr3 (88-213)||(42462549-42462674)
chr3 (1-85)||(8542261-8542345)
chr3 (87-207)||(48547382-48547502)
chr3 (4-205)||(30737247-30737434)
chr3 (1-85)||(9818816-9818900)
chr3 (2-51)||(10753820-10753869)
chr3 (1-85)||(9246785-9246869)
chr3 (2-58)||(39633241-39633297)
chr3 (103-213)||(23603107-23603217)
chr3 (88-213)||(42459560-42459685)
chr3 (1-58)||(42462476-42462533)
chr3 (2-78)||(16663733-16663809)
chr3 (88-135)||(8542334-8542381)
chr3 (4-40)||(44879754-44879790)
chr3 (2-58)||(52196044-52196100)
chr3 (2-69)||(48547311-48547378)
chr3 (2-79)||(8595014-8595091)
chr3 (2-79)||(23603020-23603097)
[»] chr5 (11 HSPs)
chr5 (1-213)||(10462405-10462603)
chr5 (1-213)||(5825237-5825435)
chr5 (1-209)||(6678848-6679042)
chr5 (87-205)||(11265853-11265971)
chr5 (87-207)||(27891526-27891646)
chr5 (2-85)||(38931526-38931609)
chr5 (2-85)||(31963054-31963137)
chr5 (2-58)||(29322550-29322606)
chr5 (2-46)||(8895141-8895185)
chr5 (2-58)||(11265782-11265838)
chr5 (2-58)||(29150062-29150118)
[»] chr8 (7 HSPs)
chr8 (2-212)||(2959859-2960055)
chr8 (1-213)||(26077994-26078192)
chr8 (2-213)||(31423483-31423680)
chr8 (88-204)||(26390518-26390634)
chr8 (88-204)||(29530003-29530118)
chr8 (2-85)||(26390623-26390706)
chr8 (2-46)||(29529931-29529975)
[»] chr1 (16 HSPs)
chr1 (1-213)||(41343076-41343274)
chr1 (91-213)||(27029784-27029906)
chr1 (91-213)||(10003763-10003885)
chr1 (87-207)||(5557095-5557215)
chr1 (1-85)||(48759800-48759884)
chr1 (4-85)||(37666112-37666193)
chr1 (88-154)||(44753748-44753814)
chr1 (2-79)||(49369524-49369601)
chr1 (1-81)||(44753807-44753887)
chr1 (121-212)||(26995826-26995917)
chr1 (1-72)||(27029708-27029779)
chr1 (2-68)||(5557024-5557090)
chr1 (95-197)||(45757519-45757621)
chr1 (120-213)||(49369628-49369721)
chr1 (160-212)||(40392606-40392658)
chr1 (2-46)||(45757440-45757484)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-213)||(74054-74252)
[»] chr6 (7 HSPs)
chr6 (88-205)||(667092-667209)
chr6 (1-202)||(18295675-18295862)
chr6 (87-207)||(28605161-28605281)
chr6 (88-213)||(2894066-2894191)
chr6 (2-58)||(5391926-5391982)
chr6 (2-78)||(17227685-17227761)
chr6 (2-85)||(9759885-9759968)
[»] scaffold0032 (2 HSPs)
scaffold0032 (88-205)||(58672-58789)
scaffold0032 (2-72)||(58791-58861)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 9403591 - 9403393
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |    
T  9403591 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg--------------t 9403506  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||    
T  9403505 tacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatgctttgagaaacctccaagtgcacaaaactgatttgc 9403406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37076056 - 37075858
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||              |||||    
T  37076056 agctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcct--------------cctgt 37075971  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| | || || ||||| ||||||||| ||| |||  |||||||||||||| ||    
T  37075970 tacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagtttgcacagaatgctttgagaatccttcaagtgcacaaaactgattagc 37075871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 34981603 - 34981800
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||              ||||||||||    
T  34981603 agctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaa--------------atcctcctgt 34981688  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||| | || || ||||| ||||||||| |||||||  |||||||||||||| ||    
T  34981689 tacgatctttccaaatagaaaataagaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaaaactgattagc 34981788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 40892230 - 40892032
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||              |    
T  40892230 agctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctg--------------t 40892145  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||  |||  | ||| |||||||||||  |    
T  40892144 tgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaagtctcttagagcgcaaaactgattatc 40892045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 586540 - 586738
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||  | | ||||||||||||| || ||||| | |              |    
T  586540 agctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagaacttccaattaatcaatttggttttggaatatccttcgg--------------t 586625  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| ||||||||||||||||||||||||||||||||||  || ||||||| | ||| ||||||||| ||||||| ||| ||||||||||| ||    
T  586626 ttcgatctttccatatagtaaataagaccgaaatccaaataatagtgaaagctttcatataattctttgagaagcctccaagagcgcaaaactgattagc 586725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3483159 - 3483075
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  3483159 agctttcaaccaccaaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctg 3483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12121342 - 12121540
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||| |||| | |||||||||||||||| ||||              |||||||||    
T  12121342 agctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaa--------------tcctcctgt 12121427  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| ||||||||| ||||| | || ||||||||||||| ||| ||||||| ||||| |||||||||||| || | ||| ||||||||||| ||    
T  12121428 tgcgatctttccatatagtatataaggctgagatccaaataatagtaaaagctttcatagaattctttgagaaaccgcctagagcgcaaaactgattagc 12121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 24819526 - 24819651
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    |||||||||||||| ||| |||| ||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| |    
T  24819526 aaaatcctcctgttgcgaactttccatatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgc 24819625  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||||||||| ||||| |||||||||    
T  24819626 aaaactgattagcatgagaatataaa 24819651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 36575772 - 36575650
Alignment:
Q  91 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaa 190  Q
    ||||||||||| | |||||| || |||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| ||||    
T  36575772 atcctcctgttgcaatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaa 36575673  T
Q  191 actgatttgcatgtgaatataaa 213  Q
    ||||||| ||||| |||||||||    
T  36575672 actgattagcatgagaatataaa 36575650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 21607994 - 21608136
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||| |||||| |||| ||||||||||||| |||||||||       |||       |    
T  21607994 agctttcaaccaccaaaacgtttgaagtttaaccctttcaaaaagagcttccaaatgatcaatttggttttggaaaatcctc-------aat-------t 21608079  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttca 157  Q
    | ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  21608080 tgcgatcttttcatataataaataagaccgaaatccaaataatagtaaaagctttca 21608136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 20705886 - 20705759
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    |||||||||||| || |||||||| || |||   ||||||||||||||||||||||||| ||| |||  |  ||| | ||| ||||| |||||||  |||    
T  20705886 aaaaatcctcctatttcgatctttccaaataacgaataagaccgaaatccaaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgca 20705787  T
Q  187 caaaactgatttgcatgtgaatataaag 214  Q
    ||||||||||  | ||||||| ||||||    
T  20705786 caaaactgatgagtatgtgaaaataaag 20705759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 20873930 - 20873803
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    |||||||||||| || |||||||| || |||   ||||||||||||||||||||||||| ||| |||  |  ||| | ||| ||||| |||||||  |||    
T  20873930 aaaaatcctcctatttcgatctttccaaataacgaataagaccgaaatccaaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgca 20873831  T
Q  187 caaaactgatttgcatgtgaatataaag 214  Q
    ||||||||||  | ||||||| ||||||    
T  20873830 caaaactgatgagtatgtgaaaataaag 20873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 31253050 - 31253113
Alignment:
Q  91 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 154  Q
    ||||||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||| ||||    
T  31253050 atcctcctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctt 31253113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 27868667 - 27868728
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaat 63  Q
    ||||||||||||||| ||||||||| ||| | ||||||||||||| |||| |||||| ||||    
T  27868667 gctttcaaccaccaatacgtttggattttaatcctttcaagaagagcttctagatgatcaat 27868728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 22866213 - 22866157
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  22866213 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 22866157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 27278440 - 27278548
Alignment:
Q  97 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgat 196  Q
    ||||| ||||||||  |||||  |||||||||| ||| ||| ||||||| ||| ||| |   ||||| | ||||||||||| ||| ||||||||||||||    
T  27278440 ctgttgcgatctttcaatataacaaataagaccaaaacccatataatagtaaaagctgttctagaattccttgagaaacctgcaagagcacaaaactgat 27278539  T
Q  197 ttgcatgtg 205  Q
    | |||||||    
T  27278540 tagcatgtg 27278548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 27868806 - 27868854
Alignment:
Q  165 ctttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataaa 213  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||| ||||    
T  27868806 ctttgagaaacctccaaaagcacaaaattgattagcatgagaatgtaaa 27868854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24819453 - 24819524
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 72  Q
    |||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || ||||||||||    
T  24819453 agctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttg 24819524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36575848 - 36575777
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 72  Q
    |||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || ||||||||||    
T  36575848 agctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttg 36575777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31252974 - 31253058
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    |||||||||||||||| | ||||| |||||||| |||||||  ||||| |||| | || |  |||||||||| || |||||||||    
T  31252974 agctttcaaccaccaatatgtttgaagtttgactctttcaaatagaacctccaaaagagcgctttggttttggaatatcctcctg 31253058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6614500 - 6614302
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||              |    
T  6614500 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcatg--------------t 6614415  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6614414 tgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgc 6614315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15649533 - 15649336
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||              |    
T  15649533 agctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctg--------------t 15649448  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||| | || || ||||| ||||||||| |||||||  |||||||||||||| ||    
T  15649447 tacgatctttccaaatagaaaataagaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaaaactgattagc 15649348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 18116849 - 18116650
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||            || |||| ||||||| |    
T  18116849 agctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggtttt------------tggaaaa-tcctcctat 18116763  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||| ||||||||||| ||    
T  18116762 tgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaactgattagc 18116663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 23158616 - 23158418
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||||||||| | |||||||||||||||| ||||||||||||              |    
T  23158616 agctttcaaccaccaaaacgtttgaaatttgactctttcaagtagaacttccaaaagaacaatttggttttggaaaatcctcctg--------------t 23158531  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||| ||| ||||||||||| ||    
T  23158530 tgcgatcttttcatatagtatataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacctccaagagcgcaaaactgattagc 23158431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 36279669 - 36279471
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||||||||| | |||||||||||||||| ||||||||||||              |    
T  36279669 agctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacttccaaaagaacaatttggttttggaaaatcctcctg--------------t 36279584  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||| | ||| ||||||||||||||||| ||| ||||||||||| ||    
T  36279583 tgcgatctttccatatagtatataagaccgaaatccaaataatagtaaaagctttcatataattctttgagaaacctccaagagcgcaaaactgattagc 36279484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 51872441 - 51872629
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||| |||| | ||||||||||||||||               |||||||||||||    
T  51872441 agctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttg--------------gaaaatcctcctgt 51872526  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||| ||| || |||||| ||||| |||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| | | ||||||||||||| ||    
T  51872527 tgcgatttttccaaatagtatataaggccgatatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagaccacaaaactgattagc 51872626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 22340423 - 22340533
Alignment:
Q  103 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 202  Q
    |||||||| ||||||  |||||| ||| |||||||||||||||| || ||||||| ||||| |||||| |||||||||| ||||||||||||||| ||||    
T  22340423 cgatctttccatataacaaataaaaccaaaatccaaataatagacaaagctttcatagaattctttgaaaaacctccaagagcacaaaactgattagcat 22340522  T
Q  203 gtgaatataaa 213  Q
    | | |||||||    
T  22340523 gaggatataaa 22340533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 8110746 - 8110866
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    ||||||||||||||| || || || || |||  |||||||||||||||||| ||||||| ||| ||| ||  ||||| ||||||||| ||||||| ||||    
T  8110746 aaaaatcctcctgttgcggtccttccaaataacaaataagaccgaaatccatataatagtaaaagctgtcctagaattctttgagaaccctccaagagca 8110845  T
Q  187 caaaactgatttgcatgtgaa 207  Q
    ||||||||||| |||||||||    
T  8110846 caaaactgattagcatgtgaa 8110866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 29123816 - 29123707
Alignment:
Q  103 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 202  Q
    |||||||| || |||  |||||| |||||||||||||||||||| || ||||||| ||||| |||||| |||||||||| ||||||||||||||| ||||    
T  29123816 cgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcatagaattctttga-aaacctccaagagcacaaaactgattagcat 29123718  T
Q  203 gtgaatataaa 213  Q
    | | |||||||    
T  29123717 gaggatataaa 29123707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 17838927 - 17838802
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    |||||| || |||| |||||||| || |||  |||||| ||| |||||||||||||||| || |||||||  |||| |||||| || || |||| |||||    
T  17838927 aaaatcttcatgttgcgatctttccaaataacaaataaaaccaaaatccaaataatagacaaagctttcatggaattctttgaaaagcccccaagagcac 17838828  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||||||||| ||||||| |||||||    
T  17838827 aaaactgattagcatgtgtatataaa 17838802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 50694219 - 50694136
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||| |||  || || |||||||| ||||||    
T  50694219 gctttcagccaccaaaacgtttgaagtttaaccctttcaagaagaacttcaagatgatcaaagtgattctgaaaaattctcctg 50694136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 24059482 - 24059596
Alignment:
Q  98 tgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatt 197  Q
    ||||||| |||||||| |||  ||||||||||||||||||||||||||| |||| | ||   |||| ||||||||| |||| || |||  ||||||||||    
T  24059482 tgttacggtcttttcagataacaaataagaccgaaatccaaataatagagaatgatgtccttgaattctttgagaaccctctaagagcttaaaactgatt 24059581  T
Q  198 tgcatgtgaatataa 212  Q
    || ||| | ||||||    
T  24059582 tgaatgagcatataa 24059596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 29192780 - 29192726
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagat 56  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  29192780 gctttcaaccaccaaaacgtttggagtttaaccctttcaagtagagcttcaagat 29192726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 4303667 - 4303590
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 79  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||    
T  4303667 gctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatc 4303590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 15706025 - 15705948
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 79  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||    
T  15706025 gctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatc 15705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 4723358 - 4723310
Alignment:
Q  5 ttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttcca 53  Q
    |||||||||||||||||||| ||||||||||||| || |||||||||||    
T  4723358 ttcaaccaccaaaacgtttgaagtttgacccttttaataagaacttcca 4723310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 3621326 - 3621409
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||| | || || ||||| |||||||||| |||| |||| |||||  || ||||||| |||||||||||||||    
T  3621326 gctttcaaccaccaataagtctgaagtttaaccctttcaaaaagagcttcaagatgttcattttggttctgaaaaatcctcctg 3621409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 17838999 - 17838929
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 72  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | || ||||||||    
T  17838999 gctttcatccaccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatgatccatatggttttg 17838929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 29123903 - 29123823
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctc 82  Q
    ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||||| | || | |||||| |||||||||    
T  29123903 gctttcatccaccaaaaagtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatcctc 29123823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 34994483 - 34994539
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  34994483 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 34994539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 36950958 - 36951014
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  36950958 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 36951014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 12290620 - 12290687
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 154  Q
    ||||||||| || || |||||||| || |||  |||||||||||||||||||||||||| ||| ||||    
T  12290620 aaaaatccttctatttcgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctt 12290687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 12915548 - 12915631
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||| ||||||| ||||| |||||||| | |||| |||| |||||| |||  || ||||| ||||| ||||||    
T  12915548 gctttcaaccaccaatacgtttgaagtttaaccctttccataagagcttctagatgatcaaagtgattttggaaaattctcctg 12915631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 17469589 - 17469506
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||| ||||||||| ||||| ||||| | ||||||||||||| |||| |||||| |||  || || |||||||| ||||||    
T  17469589 gctttcagccaccaaaatgtttgaagtttaatcctttcaagaagagcttcaagatgatcaaagtgattctgaaaaattctcctg 17469506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 4303580 - 4303470
Alignment:
Q  103 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 202  Q
    |||||||| || |||  |||||| | ||||||||||| |||||| || ||||||  ||||  |||||| ||||||||||  |||||||| ||||| ||||    
T  4303580 cgatctttccaaataacaaataaaatcgaaatccaaacaatagacaaagctttcgtagaactctttgaaaaacctccaagggcacaaaattgattagcat 4303481  T
Q  203 gtgaatataaa 213  Q
    | | |||||||    
T  4303480 gggtatataaa 4303470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 15705938 - 15705828
Alignment:
Q  103 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 202  Q
    |||||||| || ||| ||||||| ||||||||||||| |||||| || ||||||  ||||  |||||| ||| ||||||  |||||||| || || ||||    
T  15705938 cgatctttccaaataataaataaaaccgaaatccaaacaatagataaagctttcgtagaactctttgaaaaatctccaagggcacaaaattggttagcat 15705839  T
Q  203 gtgaatataaa 213  Q
    | | |||||||    
T  15705838 gggtatataaa 15705828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 12915620 - 12915677
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatag 145  Q
    ||||| |||||||| |||||||| ||||||  | |||||||||||||| |||||||||    
T  12915620 aaaattctcctgttgcgatctttccatataacatataagaccgaaatctaaataatag 12915677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 22340336 - 22340413
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 79  Q
    ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||||| | || | |||||| ||||||    
T  22340336 gctttcatccaccaaaaagtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatc 22340413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 25135116 - 25135164
Alignment:
Q  97 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatag 145  Q
    |||||||||||||| || |||  ||||||||| ||||||||||||||||    
T  25135116 ctgttacgatctttccaaataacaaataagactgaaatccaaataatag 25135164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 23384599 - 23384797
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||              ||||||||||    
T  23384599 agctttcaaccaccaaaacatttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaa--------------atcctcctgt 23384684  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    |  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  23384685 tgtgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagtacaaaactgatttgc 23384784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 27915067 - 27914869
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||              |    
T  27915067 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaactttcaaatgaacaatttggttttggaaaatcctcctg--------------t 27914982  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  27914981 tgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactggtttgc 27914882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21963164 - 21963362
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||              ||||||||||||||    
T  21963164 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttg--------------aaaaatcctcctgt 21963249  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| || ||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||||||| ||||  |||||||||||||| ||    
T  21963250 tgcgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacaaaatgctttgagaaaccgccaagtgcacaaaactgattagc 21963349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 32349703 - 32349828
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    |||||||||||||| |||||||| ||||||||  |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| | ||| |    
T  32349703 aaaatcctcctgttgcgatctttccatatagtgtataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgc 32349802  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||||||||| ||||| | |||||||    
T  32349803 aaaactgattagcatgagtatataaa 32349828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 30275719 - 30275843
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||| | | ||| |    
T  30275719 aaaattctcctgttgcgatcttttcatatagtatataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacct-ctagagcgc 30275817  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||||||||| ||||| | |||||||    
T  30275818 aaaactgattagcatgagtatataaa 30275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 38938301 - 38938426
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    |||||| || |||| |||||||| || |||  ||||||||| |||||||||||||||| ||| ||||||| ||||| |||||| || |||| || |||||    
T  38938301 aaaatcatcatgttgcgatctttccaaataacaaataagacagaaatccaaataatagtaaaagctttcatagaattctttgaaaagcctctaagagcac 38938400  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||| ||||| ||||||| |||||||    
T  38938401 aaaaatgattagcatgtgtatataaa 38938426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 22298669 - 22298752
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||| |||| |||||| |||  || ||||||||||| ||||||    
T  22298669 gctttcaaccaccaatacgtttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattttgaaaaattctcctg 22298752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 33937240 - 33937157
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||| |||| |||||| |||  || || |||||||| ||||||    
T  33937240 gctttcaaccaccaatacgtttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattctgaaaaattctcctg 33937157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 20007337 - 20007451
Alignment:
Q  98 tgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatt 197  Q
    ||||||| ||||| || |||  ||||||||||||||||||||||||||| |||| | ||   ||||  |||||||| ||||||| | ||||||| |||||    
T  20007337 tgttacggtctttccagataacaaataagaccgaaatccaaataatagagaatgttatccttgaattttttgagaaccctccaagaacacaaaattgatt 20007436  T
Q  198 tgcatgtgaatataa 212  Q
    || ||| | ||||||    
T  20007437 tgaatgagcatataa 20007451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 32349632 - 32349701
Alignment:
Q  3 ctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 72  Q
    |||||||| ||||||||||||| |||||||| |||||||| || || | || | ||||||||||||||||    
T  32349632 ctttcaactaccaaaacgtttgaagtttgactctttcaagtagcaccttcaaaagaacaatttggttttg 32349701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30274485 - 30274532
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaac 48  Q
    |||||||||||||||||| ||||| |||||||| |||||||| |||||    
T  30274485 agctttcaaccaccaaaatgtttgaagtttgactctttcaagtagaac 30274532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 38938229 - 38938284
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatg 57  Q
    |||||||||| |||||| ||||| ||||| ||||||||||||||| |||| |||||    
T  38938229 gctttcaaccgccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatg 38938284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 1258217 - 1258273
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||||||||||| || |||||||||| ||||||||||  ||| |||| ||||||    
T  1258217 gctttcaaccaccaatacatttggagtttaaccctttcaaagagagcttcaagatga 1258273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 17154273 - 17154075
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||              |    
T  17154273 agctttcaaccaccaaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctg--------------t 17154188  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | | |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  17154187 tgcaatctttccatatagtaaataagactgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcgcaaaactgatttgc 17154088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 53152551 - 53152353
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||              |    
T  53152551 agctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg--------------t 53152466  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||| |||||||  |||||||||||||| ||    
T  53152465 tacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacagaatgctttgagaatcctccaagtgcacaaaactgattagc 53152366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 23572087 - 23571889
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||||||              |    
T  23572087 agctttcaaccaccaaaacgtttgaagtttgaccctttcaattagaacttccaaatgaacaatttggttttggaaaatcctcctg--------------t 23572002  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||    
T  23572001 tgcgatctttccatatagaaaataataccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaaaagcacaaaactgattagc 23571902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 32945649 - 32945786
Alignment:
Q  3 ctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgtta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||    
T  32945649 ctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg--------------aaaaatcctcctgtta 32945734  T
Q  103 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 154  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  32945735 cgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagctt 32945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 3514440 - 3514638
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||| |||| | |||||||||||||||| ||||              |||||||||    
T  3514440 agctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaa--------------tcctcctgt 3514525  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| || |||||| |||||||||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| | ||| ||||||||||| ||    
T  3514526 tgcgatctttccaaatagtatataagaccgagatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaactgattagc 3514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 9818888 - 9819014
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    ||||||||||||||| |||||||  ||||||||| ||||||||||||||||||| |||| ||| ||||||| | ||| |||||||||||| || |||||     
T  9818888 aaaaatcctcctgttgcgatcttcccatatagtatataagaccgaaatccaaatgatagtaaaagctttcataaaattctttgagaaaccacctaaagcg 9818987  T
Q  187 caaaactgatttgcatgtgaatataaa 213  Q
    ||||||||||| ||||| |||||||||    
T  9818988 caaaactgattagcatgagaatataaa 9819014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 42462549 - 42462674
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    ||||||||| |||| ||||||||||| |||  |||||||||||||||||||||||||| |||  |||||| | ||| |||||| || ||||||| |||||    
T  42462549 aaaatcctcatgttgcgatcttttcaaataacaaataagaccgaaatccaaataatagtaaaacctttcatataattctttgaaaagcctccaagagcac 42462648  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||||||||| ||||||| |||||||    
T  42462649 aaaactgattagcatgtgtatataaa 42462674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8542261 - 8542345
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  8542261 agctttcaaccaccaaaacgttcgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctg 8542345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 48547382 - 48547502
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    ||||||||||||||| |||||||| || |||  |||||||||||||||||| ||||||| ||| | | ||  ||| | ||||||||||||||||| ||||    
T  48547382 aaaaatcctcctgttgcgatctttccaaataacaaataagaccgaaatccatataatagtaaaagttgtcctagacttctttgagaaacctccaagagca 48547481  T
Q  187 caaaactgatttgcatgtgaa 207  Q
    ||||||||||| |||||||||    
T  48547482 caaaactgattagcatgtgaa 48547502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 30737247 - 30737434
Alignment:
Q  4 tttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgttac 103  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||| |||||| |||| || ||||| ||||| |||||               || |    
T  30737247 tttcaaccaccaatacgtttgaagtttaaccctttcaagaagagcttcaagatgatcaatgtgattttggaaaattctcctc--------------ttgc 30737332  T
Q  104 gatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcatg 203  Q
    ||||||||||||||  |||||||||||||||||| ||||||| ||| | | ||  ||| | ||||||||||||||||| || |||||||||||| |||||    
T  30737333 gatcttttcatataacaaataagaccgaaatccatataatagtaaaagttgtcctagagttctttgagaaacctccaagagtacaaaactgattcgcatg 30737432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 9818816 - 9818900
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    |||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || |||||||||||||||||||||||    
T  9818816 agctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttgaaaaatcctcctg 9818900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 10753820 - 10753869
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttc 51  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  10753820 gctttcaaccaccaaaacgtctggagtttaaccctttcaagaagaacttc 10753869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 9246785 - 9246869
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    |||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | ||||| |||||||||| || |||||||||    
T  9246785 agctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagaacactttggttttggaatatcctcctg 9246869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 39633297 - 39633241
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||    
T  39633297 gctttcaaccaccaaaacgtttggagtttaaccctttcaagtagagcttcaagatga 39633241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 23603107 - 23603217
Alignment:
Q  103 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 202  Q
    |||||||| || |||  |||||| | |||||||||||||||||| |  ||||||| ||||| |||||| || ||||||| ||||||||||||| | ||||    
T  23603107 cgatctttccaaataacaaataaaatcgaaatccaaataatagacagagctttcatagaattctttgaaaatcctccaagagcacaaaactgaatagcat 23603206  T
Q  203 gtgaatataaa 213  Q
    | | |||||||    
T  23603207 gaggatataaa 23603217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 42459685 - 42459560
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    ||||| |||||||| |||||||| ||||||  | |||||||||||||||||||||||| ||| |||  || | ||  | ||||||| || || | |||||    
T  42459685 aaaattctcctgttgcgatctttccatataacatataagaccgaaatccaaataatagtaaacgctaacatataactccttgagaagccaccgagagcac 42459586  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||||||||| ||||| |||| ||||    
T  42459585 aaaactgattagcatgagaatgtaaa 42459560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42462476 - 42462533
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||| |||| ||||||    
T  42462476 agctttcaaccaccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatga 42462533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 16663733 - 16663809
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaat 78  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| |||||| ||| ||| || ||||||||    
T  16663733 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcaaattgattctgaaaaat 16663809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 8542334 - 8542381
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatc 135  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||    
T  8542334 aaaatcctcctgttacgatctttcaatatagtaaataagaccaaaatc 8542381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 44879754 - 44879790
Alignment:
Q  4 tttcaaccaccaaaacgtttggagtttgaccctttca 40  Q
    ||||||||||||||||||||| |||||||||||||||    
T  44879754 tttcaaccaccaaaacgtttgaagtttgaccctttca 44879790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 52196044 - 52196100
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  52196044 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 52196100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 48547311 - 48547378
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggtt 69  Q
    ||||||||||||||| | ||||| ||||| |||||||||| |||| |||| |||||  ||||||||||    
T  48547311 gctttcaaccaccaataagtttgaagtttaaccctttcaaaaagagcttcgagatgttcaatttggtt 48547378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 8595014 - 8595091
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 79  Q
    ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||| | | || |||||||| ||||||    
T  8595014 gctttcatccaccaaaaggtttgaagtttaaccttttcaagaagagcttcaagataacccatatggttttggaaaatc 8595091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 23603020 - 23603097
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 79  Q
    ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||||| | || | |||||| ||||||    
T  23603020 gctttcatccaccaaaaggtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatc 23603097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 10462603 - 10462405
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||               |    
T  10462603 agctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccaaatgaacaatttggttttggaaaatcctccta--------------t 10462518  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||| |||||    
T  10462517 tgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcacagaattctttgagaaacctccaagagcacaaatctggtttgc 10462418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5825435 - 5825237
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||              |||||    
T  5825435 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttgaaaaatcct--------------cctgt 5825350  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| || ||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||||||| ||||  |||||||||||||| ||    
T  5825349 tgcgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacataatgctttgagaaaccgccaagtgcacaaaactgattagc 5825250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 6679042 - 6678848
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||              |||||    
T  6679042 agctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcct--------------cctgt 6678957  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| |||| || ||| | ||||||||  |||||||  |||||||||||||| ||    
T  6678956 tacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacagagtgctttgagactcctccaagtgcacaaaactgattagc 6678857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 11265853 - 11265971
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    |||||||||||||||||||||||| || |||  |||||||||||||||||||||||||| ||| ||||||| ||| | | ||||||||||||||| ||||    
T  11265853 aaaaatcctcctgttacgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctttcatagacttccttgagaaacctccaagagca 11265952  T
Q  187 caaaactgatttgcatgtg 205  Q
    ||||||||||| |||||||    
T  11265953 caaaactgattagcatgtg 11265971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 27891526 - 27891646
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    ||||||||||||||| |||||||| || |||  |||||||||| ||||||| ||||||| ||| | | ||  ||| | ||||||||| ||||||| ||||    
T  27891526 aaaaatcctcctgttgcgatctttccaaataacaaataagacctaaatccatataatagtaaaagatgtcctagacttctttgagaaccctccaagagca 27891625  T
Q  187 caaaactgatttgcatgtgaa 207  Q
    ||||||||||| |||||||||    
T  27891626 caaaactgattagcatgtgaa 27891646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 38931526 - 38931609
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||| |||  || || |||||||| ||||||    
T  38931526 gctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagagcttcaagatgatcaaagtgattctgaaaaattctcctg 38931609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 31963137 - 31963054
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||| |||| |||||| |||| || |  |||||||| ||||||    
T  31963137 gctttcaaccaccaatacgtttggattttaaccctttcaagaagagcttctagatgatcaatgtgatgctgaaaaattctcctg 31963054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 29322550 - 29322606
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  29322550 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 29322606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 8895141 - 8895185
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaaga 46  Q
    |||||||||||| ||| |||||| ||||| |||||||||||||||    
T  8895141 gctttcaaccactaaaccgtttgaagtttaaccctttcaagaaga 8895185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 11265782 - 11265838
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||||||||||| | ||||| ||||| ||||||||||| ||| |||| ||||||    
T  11265782 gctttcaaccaccaataagtttgaagtttaaccctttcaaggagagcttcaagatga 11265838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 29150062 - 29150118
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    |||||||||||| || ||||||| ||||| |||||||||| |||| |||| ||||||    
T  29150062 gctttcaaccacgaatacgtttgaagtttaaccctttcaataagagcttcaagatga 29150118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 2960055 - 2959859
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgtt 101  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||              ||    
T  2960055 gctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctg--------------tt 2959970  T
Q  102 acgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgca 201  Q
    ||||||||| || |||| |||||||||||||||||||||||||||||| | || || ||||| ||||||||| |||||||  |||||||||||||| |||    
T  2959969 acgatctttccaaatagaaaataagaccgaaatccaaataatagaaaaagtttacatagaatgctttgagaatcctccaagtgcacaaaactgattagca 2959870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26078192 - 26077994
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| |||| | ||||||| ||||| || ||||||||||||              |    
T  26078192 agctttcaaccaccaaaacgtttgaagtttgactctttcaagaagaacatccaaaagaacaatatggttatggaaaatcctcctg--------------t 26078107  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| || |||||| |||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||| | ||| ||||||||||| ||    
T  26078106 tgcgatctttccaaatagtatataagaccgagatccaaataatagaaaaagctttcatagaattctttgagaaccctcctagagcgcaaaactgattagc 26078007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 31423680 - 31423483
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgtt 101  Q
    ||||||||||||||| | ||||| ||||| |||||||||| |||| |||| |||||| ||||||||||||| ||||||||||||              ||    
T  31423680 gctttcaaccaccaataagtttgaagtttaaccctttcaaaaagagcttcgagatgatcaatttggttttggaaaatcctcctg--------------tt 31423595  T
Q  102 acgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgca 201  Q
     ||||||||||| |||  |||||||||||||||||| ||||||| ||| | | ||  ||| | ||||||||||||||||| ||||||||||||||| |||    
T  31423594 gcgatcttttcaaataacaaataagaccgaaatccatataatagtaaaagttgtcctagagttctttgagaaacctccaagagcacaaaactgattagca 31423495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 26390634 - 26390518
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    ||||| |||||||| |||||||| ||||||  ||||||||| ||| |||||||||||| ||| | | ||  ||||| |||||||||||| || |  ||||    
T  26390634 aaaattctcctgttgcgatctttccatataacaaataagacagaagtccaaataatagtaaaagttgtcctagaattctttgagaaaccaccgagggcac 26390535  T
Q  188 aaaactgatttgcatgt 204  Q
    ||||||| || ||||||    
T  26390534 aaaactggttagcatgt 26390518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 29530003 - 29530118
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    ||||| || |||||||||||||| ||||||  ||||||||| ||| |||| ||||||| ||| | | ||  ||||| ||||||||||||| |||  ||||    
T  29530003 aaaattcttctgttacgatctttccatataacaaataagacagaagtccagataataggaaa-gttgtcctagaattctttgagaaacctacaagggcac 29530101  T
Q  188 aaaactgatttgcatgt 204  Q
    |||||||||| ||||||    
T  29530102 aaaactgattagcatgt 29530118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 26390706 - 26390623
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||||||||||| || || | ||||||||||||| | || |||||| || | || ||||| ||||| ||||||    
T  26390706 gctttcaaccaccaaaacgtttgaagcttaatcctttcaagaagagcctctagatgatcactgtgattttggaaaattctcctg 26390623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 29529931 - 29529975
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaaga 46  Q
    ||||||||||||||||| ||||| || || |||||||||||||||    
T  29529931 gctttcaaccaccaaaatgtttgaagcttaaccctttcaagaaga 29529975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 41343274 - 41343076
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||| |||||||||||               |    
T  41343274 agctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggttttggaaaatcctccta--------------t 41343189  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||| ||||||||||| ||    
T  41343188 tgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaactgattagc 41343089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 27029784 - 27029906
Alignment:
Q  91 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaa 190  Q
    ||||||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| ||||    
T  27029784 atcctcctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaa 27029883  T
Q  191 actgatttgcatgtgaatataaa 213  Q
    ||||||| ||||| |||||||||    
T  27029884 actgattagcatgagaatataaa 27029906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 10003763 - 10003885
Alignment:
Q  91 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaa 190  Q
    ||||| ||||| |||||||| || |||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| ||||    
T  10003763 atccttctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaa 10003862  T
Q  191 actgatttgcatgtgaatataaa 213  Q
    ||||||| ||||| |||||||||    
T  10003863 actgattagcatgagaatataaa 10003885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 5557095 - 5557215
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    ||||||||||||||| |||||||| || | |  |||||||||||||||||| ||||||| ||| | | || |||||| |||||||||| |||||| ||||    
T  5557095 aaaaatcctcctgttgcgatctttccaaacaacaaataagaccgaaatccatataatagtaaaagttatccaagaattctttgagaaagctccaagagca 5557194  T
Q  187 caaaactgatttgcatgtgaa 207  Q
    ||||||||||| |||||||||    
T  5557195 caaaactgattagcatgtgaa 5557215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 48759884 - 48759800
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    |||||||||||||||||||||||| |||||||| |||||||| | ||| |||| | |||||||||||||||| |||||| |||||    
T  48759884 agctttcaaccaccaaaacgtttgaagtttgactctttcaagtaaaacctccaaaagaacaatttggttttggaaaatcttcctg 48759800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 37666112 - 37666193
Alignment:
Q  4 tttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||| ||| ||| |  |||||||| ||||||    
T  37666112 tttcaaccaccaaaatgtttggagtttgaccctttcaagtagagcttcaagatgatcaaattgatgctgaaaaattctcctg 37666193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 44753814 - 44753748
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 154  Q
    |||||||| ||||| || ||||| ||||||||| |||||||||||||||||||||||| ||| ||||    
T  44753814 aaaatccttctgttgcggtctttccatatagtatataagaccgaaatccaaataatagtaaaagctt 44753748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 49369524 - 49369601
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 79  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | |  |||||||| ||||||    
T  49369524 gctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagatgacccaaatggttttggaaaatc 49369601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44753887 - 44753807
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcct 81  Q
    |||||||||||||||| | |||||||||||||| |||||||| ||||  |||| | |  || |||||||||| ||||||||    
T  44753887 agctttcaaccaccaatatgtttggagtttgactctttcaagtagaaactccaaaagtgcactttggttttggaaaatcct 44753807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 26995826 - 26995917
Alignment:
Q  121 aataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataa 212  Q
    |||||||||||||||||||||| ||| |||| | ||   ||||  |||||||| ||||||| || |||||||||||||| ||| | ||||||    
T  26995826 aataagaccgaaatccaaataacagagaatgttgtccttgaattttttgagaaccctccaagagtacaaaactgatttgaatgagcatataa 26995917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 27029708 - 27029779
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 72  Q
    |||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || ||||||||||    
T  27029708 agctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttg 27029779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 5557024 - 5557090
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggt 68  Q
    ||||||||||||||  | ||||| ||||| |||||||||| |||| |||| |||||| |||||||||    
T  5557024 gctttcaaccaccagtaagtttgaagtttaaccctttcaaaaagagcttcgagatgatcaatttggt 5557090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 45757519 - 45757621
Alignment:
Q  95 tcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactg 194  Q
    ||||||| | |||||| ||||||  |||||||||  || |||| ||||||| ||| | | ||  ||||| ||||||||| |||||||| |||||||||||    
T  45757519 tcctgttgcaatctttccatataacaaataagacaaaagtccagataatagtaaaaggtgtcctagaattctttgagaagcctccaaaggcacaaaactg 45757618  T
Q  195 att 197  Q
    |||    
T  45757619 att 45757621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 49369628 - 49369721
Alignment:
Q  120 aaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataaa 213  Q
    |||||| | |||||||||||||||||| || ||||||  | ||| |||||| ||||||||||  ||| ||||||| || ||||| | |||||||    
T  49369628 aaataaaatcgaaatccaaataatagacaaagctttcgtataattctttgaaaaacctccaagggcataaaactggttagcatgagtatataaa 49369721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 40392606 - 40392658
Alignment:
Q  160 gaatactttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataa 212  Q
    |||| ||||||||| ||||||| ||||||||||||||||| ||| | ||||||    
T  40392606 gaattctttgagaaccctccaagagcacaaaactgatttgaatgagcatataa 40392658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 45757440 - 45757484
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaaga 46  Q
    ||||||||||||||||| ||||| || || |||||||||||||||    
T  45757440 gctttcaaccaccaaaatgtttgaagcttaaccctttcaagaaga 45757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 74054 - 74252
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||              |||||||||    
T  74054 agctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaa--------------tcctcctgt 74139  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||  |||  | ||| |||||||||||  |    
T  74140 tgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaagtctcttagagcgcaaaactgattatc 74239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 667092 - 667209
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||||||||||||| ||| ||||||| | ||| ||||||||||||||||| |||||    
T  667092 aaaatcctcctgttgcgatctttccatataacaaataagaccgaaatccaaataatagtaaaagctttcatataattctttgagaaacctccaagagcac 667191  T
Q  188 aaaactgatttgcatgtg 205  Q
    |||||||||| |||||||    
T  667192 aaaactgattagcatgtg 667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 18295862 - 18295675
Alignment:
Q  1 agctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgt 100  Q
    |||||||||||||||||||||||| |||||||| |||||||  ||||| |||| | |||||||||||||||| ||||||||| ||              |    
T  18295862 agctttcaaccaccaaaacgtttgaagtttgactctttcaaatagaacctccaaaagaacaatttggttttggaaaatcctcttg--------------t 18295777  T
Q  101 tacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgc 200  Q
    | |||||||| ||||||||| ||||| |||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| | ||| ||||||||||| ||    
T  18295776 tgcgatctttccatatagtatataaggccgagatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaactgattagc 18295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 28605281 - 28605161
Alignment:
Q  87 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 186  Q
    |||||||||||||||||||||||| || |||  |||||||||||||||||||||||||| ||| ||| ||| ||| | ||| ||||| ||||||| ||||    
T  28605281 aaaaatcctcctgttacgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctgtcatagacttcttggagaaccctccaagagca 28605182  T
Q  187 caaaactgatttgcatgtgaa 207  Q
    ||||||||||  |||||||||    
T  28605181 caaaactgatgagcatgtgaa 28605161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 2894066 - 2894191
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    |||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||| ||| |||| || ||||| ||||||||| || || | ||| |    
T  2894066 aaaatcctcctgttgcggtcttttcatatagtatataagaccgaaatccaaatgatagtaaaagcttgcatagaattctttgagaacccacctagagcgc 2894165  T
Q  188 aaaactgatttgcatgtgaatataaa 213  Q
    |||||||||  ||||| |||||||||    
T  2894166 aaaactgatgagcatgagaatataaa 2894191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 5391982 - 5391926
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 58  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  5391982 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 5391926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 17227685 - 17227761
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaat 78  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||| || | || | | |||| || |||||||||||    
T  17227685 gctttcaaccaccaatacgtttggagtttaacccttttaagaagagctgcaagctaatcaatgtgattttgaaaaat 17227761  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 9759968 - 9759885
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 85  Q
    ||||||||||||||| || |||| ||||| |||||  |||||||| | || |||||| ||||||| |||||||| || ||||||    
T  9759968 gctttcaaccaccaatacatttgaagtttaaccctcccaagaagagcatcaagatgatcaatttgattttgaaatattctcctg 9759885  T

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Target: scaffold0032 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 58789 - 58672
Alignment:
Q  88 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 187  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||||||||||||| ||| ||| ||| ||  | ||||||||||||||||| |||||    
T  58789 aaaatcctcctgttgcgatctttccatataacaaataagaccgaaatccaaataatagtaaaagctatcatagcgttctttgagaaacctccaagagcac 58690  T
Q  188 aaaactgatttgcatgtg 205  Q
    |||||||||| |||||||    
T  58689 aaaactgattagcatgtg 58672  T

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Target: scaffold0032; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 58861 - 58791
Alignment:
Q  2 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 72  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||||| |||| |||||| | || ||||||||    
T  58861 gctttcaaccaccaatatgtttgaagtttaaccctttcaagaagagcttcaagatgatccatatggttttg 58791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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