View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_high_22 (Length: 240)
Name: NF21217_high_22
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 38949506 - 38949658
Alignment:
| Q |
1 |
aatatgatgccagaactgtacctgtacgtagtatagtctatattggcgtgctaactcagtttatttattctagaagttgtatagta-ttttttctataac |
99 |
Q |
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| T |
38949506 |
aatatgatgccagaactgtacctgtacgta---tagtctatactggcgtgctaactcagtttatttattctagaagttgaatagtatttttttctataac |
38949602 |
T |
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| Q |
100 |
aaactatttctagactgnnnnnnnaagcagacaaaatgaaaatagtcatttccctg |
155 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38949603 |
aaactatttctagactgttttcttaagcagacaaaatgaaaatagtcatttccctg |
38949658 |
T |
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