View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_high_23 (Length: 239)
Name: NF21217_high_23
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5053626 - 5053405
Alignment:
| Q |
1 |
tgtgatgcaaacaagtgaaatgagcgctttttctgtgctgttgattctactaatcttctgcaattctgggttttgtattgctggtggtttgttgaatttc |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053626 |
tgtgatgctaacaagtgaaatgagcgctttttctgtgctgctgattctactaatcttctgcaattctgggttttgtattgctggtggtttgttgaatttc |
5053527 |
T |
|
| Q |
101 |
acaagttctgcttcatcgcgtaaaaatctatctagaagtagcaatccagagttggaagacaagagaggtgtgccatcaggagctaatcctctgcataatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053526 |
acaagttctgcttcatcgcgtaaaaatctatctagaagtagcaatccagagttggaagacaagagaggtgtgccatcaggagctaatcctctgcataatc |
5053427 |
T |
|
| Q |
201 |
ggtagcaacctctgtagcacct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5053426 |
ggtagcaacctctgtagcacct |
5053405 |
T |
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