View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_high_25 (Length: 237)
Name: NF21217_high_25
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_high_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5053923 - 5053687
Alignment:
| Q |
1 |
ccactattgcaactgcagtatcaaggattttgaagtctccgcaacagtattgccacggtaatataagggattttgaagcctccgcaacagtattgccact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5053923 |
ccactattgcaactgcagtatcaaggattttgaagtctccgcaacagtattgccacggtaatataagggattttgaagcctccacaacagtattgccact |
5053824 |
T |
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| Q |
101 |
gtaatataagggattttaaagtctccacaacagtattgcaaccgcaattttgacatcttattcctgcatttttctgcaatataaaggtttgcaacataac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
5053823 |
gtaatataagggattttaaagtctccacaacagtattgcaaccgcaattttgacatcttattcccgcatttttctgcaatataaaggtttgcaacgtaac |
5053724 |
T |
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| Q |
201 |
tagaaccactatatataatctatagttggtagtatta |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
5053723 |
tagaaccactatatataatctatagttggtagtatta |
5053687 |
T |
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