View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21217_high_5 (Length: 483)
Name: NF21217_high_5
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Original strand, 13885094 - 13885552
Alignment:
| Q |
9 |
gaagaatatatagacgaaaaataaattctcttactcaaattccattgaaagtgaaaagtataaaatttgattttaaacgaaatgtttagaaaaaagtttg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13885094 |
gaagaaaatatagacgaaaaataaattctcttactcaaattccattgaaagtgaaaagtataaaatttgattttaaacgaaatgtttagaaaaaagtttg |
13885193 |
T |
|
| Q |
109 |
tttttcacttttaacttatttctttggatcacttcatcctggccctataaatttaaaataacaatgatgcataatatagaaaataaattttcagtataaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13885194 |
tttttcacttttaacttatttctttggatcacttcatcctcgccctataaatttaaaataacaatgatgcataatatagaaaataaattttcagcataaa |
13885293 |
T |
|
| Q |
209 |
aaagttaattcttaatagattttttgggaataacaaatgtgttgtataatcaaatatattaatattacac-acacaaacacactattgtttgattgacat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13885294 |
aaagttaattcttaatagattttttgggaataacaaatgtgttgtataatcaaatatattaatattacacaacacaaacacactattgtttgattgacat |
13885393 |
T |
|
| Q |
308 |
tgcaaatgcataaccacatttcttactacatttccacatttcttgcctttaacgatcattcctcttgctttctttcctttcacnnnnnnnctaatccaat |
407 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
13885394 |
tgcaaatgcataaccacatttcttgccacatttccacatttcttgcctttaacgatcattcatcttgctttctttcctttcactttttttctaatccaat |
13885493 |
T |
|
| Q |
408 |
taaaacattaaactcatcttaacttccccaatttaatctctttctttttgttctcatct |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13885494 |
taaaacattaaactcatcttaacttccccaatttaatctctttctttttgttctcatct |
13885552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University