View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21217_low_10 (Length: 428)
Name: NF21217_low_10
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_10 |
 | |
|
| [»] scaffold0280 (1 HSPs) |
| | |
|
| [»] scaffold0457 (1 HSPs) |
| | |
|
| [»] scaffold0048 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 13065937 - 13065703
Alignment:
| Q |
1 |
aattagaactaagtatatataggtgagagggaaaggaacaagtttttctcaatataaaaccaaaaatagacatttgatttgaatcaatgaaatcatgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13065937 |
aattagaactaagtatatataggtgagagggaaaggaacaagttttgctcaatataaaaccaaaaatagacatttgatttgaatcaatgaaatcatgatt |
13065838 |
T |
|
| Q |
101 |
caaaacagttgtgcaaaactgagttccgggttgctttgaagattaattcgacacccatgaactttggtgtgatatggggaaaatgcgacactatttttcc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13065837 |
caaaacagttgtgcaaaaccgagttccgggttgctttgaagattaattcgacacccatgaactttggtgtgatctggggaaaatgcgacactatttttcc |
13065738 |
T |
|
| Q |
201 |
cggatatgagctctatataagctttcattcatcat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13065737 |
cggatatgagctctatataagctttcattcatcat |
13065703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 238 - 414
Target Start/End: Original strand, 13066268 - 13066444
Alignment:
| Q |
238 |
ttttggagtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatcattataattgactccgtaaatttcatcatactagtgg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13066268 |
ttttggagtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatcattataattgacttcgtaaatttcatcatactagtgg |
13066367 |
T |
|
| Q |
338 |
aaagccgtacagatttctctacgaagagtggacttactccacagcgaggatgtttgagggaaccaatatgaatcctg |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13066368 |
aaagccgtatagatttctctacgaagagtggacttactccacagcgaggatgtttgagggaaccaatatgaatcctg |
13066444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 4522 - 4636
Alignment:
| Q |
239 |
tttggagtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatcattataattgactccgtaaatttcatcatactagtgga |
338 |
Q |
| |
|
|||||||||||||||||||| | ||||| | |||| ||| ||||||||||||||| ||||| ||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
4522 |
tttggagtgattacttagcacataagatttaggatttgttagattcataaattgaaggaatctttataattgactctgtaattttcaacatactagtgga |
4621 |
T |
|
| Q |
339 |
aagccgtacagattt |
353 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
4622 |
agaccgtagagattt |
4636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 13078974 - 13079036
Alignment:
| Q |
238 |
ttttggagtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatc |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||| ||||| |
|
|
| T |
13078974 |
ttttggagtgattacttatcatagaagatttatgattggttggattcgtaaattgaaggaatc |
13079036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 9548 - 9624
Alignment:
| Q |
238 |
ttttggagtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatcattataattgactc |
314 |
Q |
| |
|
||||||||||||| ||||||||| ||||| | ||| ||||||||||||||||| || ||||| || |||||||||| |
|
|
| T |
9548 |
ttttggagtgattccttagcatataagatttaggatcggttggattcataaattaaaggaatctttgtaattgactc |
9624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 29927826 - 29927912
Alignment:
| Q |
239 |
tttggagtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatcattataattgactccgtaaatttcat |
326 |
Q |
| |
|
||||||||||||| | |||||| ||||| | |||||||||||||| ||||||||| ||||| || ||||||||| || ||||||||| |
|
|
| T |
29927826 |
tttggagtgattattgagcatataagatttaggattggttggattcgtaaattgaaggaatctttgtaattgactacg-aaatttcat |
29927912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 13399134 - 13399233
Alignment:
| Q |
240 |
ttggagtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatcattataattgactccgtaaatttcatcatactagtggaa |
339 |
Q |
| |
|
||||||||||||||||||||||||| | | ||| ||||||||| || ||| || ||||| || ||||||| | |||||||||| ||||||||||||| |
|
|
| T |
13399134 |
ttggagtgattacttagcatagaaggtttaggatcggttggatttgtagattcaaagaatctttgtaattgattttgtaaatttcaacatactagtggaa |
13399233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 83161 - 83230
Alignment:
| Q |
244 |
agtgattacttagcatagaagatatttgattggttggattcataaattgaatgaatcattataattgact |
313 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| || ||||||||| |
|
|
| T |
83161 |
agtgattacatagcatagaagattaatgatcagttggattcgtaaattgaaggaatctttgtaattgact |
83230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University