View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21217_low_12 (Length: 352)
Name: NF21217_low_12
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_12 |
 | |
|
| [»] scaffold2079 (1 HSPs) |
| | |
|
| [»] scaffold1112 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold2079 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 850 - 498
Alignment:
| Q |
1 |
cattcaatctagaaagggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
850 |
cattcaatctagaaagggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttga |
751 |
T |
|
| Q |
101 |
atctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcagactaaacttttg---atgagtacaacacatgcttcaata |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
750 |
atctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcaaactcaacttttgatgatgagtacaacacattcttcaata |
651 |
T |
|
| Q |
198 |
ttgcttt--tagagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacg |
295 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
650 |
ttgcttttatagagtcgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacg |
551 |
T |
|
| Q |
296 |
tttaatacgaattcgttttacactatactcgattgaactttcttgtccaacga |
348 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
550 |
tttaatacgaattcgttttatactatactcgattgaactttcttgtccaacga |
498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 73 - 307
Target Start/End: Original strand, 6333713 - 6333961
Alignment:
| Q |
73 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaatt------gtagctcctaattctgccattgttcttcagactaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6333713 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgtagctcctaattcagccattgttcttcaaactaa |
6333812 |
T |
|
| Q |
167 |
acttttgatgagtacaacacatgcttcaatattgctttt--------agagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagcta |
258 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |||||| ||| || |
|
|
| T |
6333813 |
acttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatatgaagaaaaaacagggaaaaagaggta |
6333912 |
T |
|
| Q |
259 |
tgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaat |
307 |
Q |
| |
|
||| |||||||| |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6333913 |
tgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaat |
6333961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 6242582 - 6242409
Alignment:
| Q |
56 |
aatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagtt------gcatttggaattgtagctcctaattctgcc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6242582 |
aatgtttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattctgcc |
6242483 |
T |
|
| Q |
150 |
attgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgcttt--tagagttgaggtttgga |
221 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
6242482 |
gttgttcttcaaacttaacttttgataagtacaacacattcttcaatattgcttttatagagttgaggtttgga |
6242409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 6326201 - 6326368
Alignment:
| Q |
41 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgta |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
6326201 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgta |
6326300 |
T |
|
| Q |
135 |
gctcctaattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgctttt |
205 |
Q |
| |
|
||| ||||||| |||||||||| | | ||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6326301 |
gcttctaattcagccattgttcgttaaact---cttttgatgagtacaacacattcttcaatattgctttt |
6326368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 6242411 - 6242311
Alignment:
| Q |
252 |
ggagctatgaaacaatttgcatgagacagtgaccca-taaaaacgtttaatacgaattcgttttacactata---ctcgattgaactttcttgtccaacg |
347 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
6242411 |
ggagctatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttcttgtccaacg |
6242312 |
T |
|
| Q |
348 |
a |
348 |
Q |
| |
|
| |
|
|
| T |
6242311 |
a |
6242311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 6220993 - 6220934
Alignment:
| Q |
141 |
aattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattg |
200 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6220993 |
aattctgccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattg |
6220934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 6330641 - 6330676
Alignment:
| Q |
279 |
agtgacccataaaaacgtttaatacgaattcgtttta |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6330676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 6347119 - 6347154
Alignment:
| Q |
279 |
agtgacccataaaaacgtttaatacgaattcgtttta |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6347154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
279 |
agtgacccataaaaacgtttaatacgaattcgttttacacta |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University