View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_low_13 (Length: 347)
Name: NF21217_low_13
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 45179037 - 45178718
Alignment:
| Q |
18 |
caatttactgttgcatgtttaacgtttggaataaaaatctaactaaactaaagataattacaattatgcagcaattagaagaaaaatatgcagcaaactt |
117 |
Q |
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| T |
45179037 |
caatttactgttgcatgtttaacgtttggaataaaaatctaactaaactaaagataattacaattatgcagcaattagaagaaaaatatgcagcaaattt |
45178938 |
T |
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| Q |
118 |
ttgaagctaatatgcaacgacctggagatgaaaaatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagataga |
217 |
Q |
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| T |
45178937 |
ttaaagctaatatgcaacgacctggagatgaaaaatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagataga |
45178838 |
T |
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| Q |
218 |
aaaaagaaattgatgcaggtacttaacaaattagtatcagtatcagacaagtattcaatacaataggtaaagataatgcaagtattagtgcttcataggt |
317 |
Q |
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| T |
45178837 |
aaaaagaaattgatgcaggtacttaacaaattagtatcagtatcaaacaagtattcaatacaataggtaaagataatgcaagtattagtgcttaataggt |
45178738 |
T |
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| Q |
318 |
tgtatcaaataagatctgtg |
337 |
Q |
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| T |
45178737 |
tctatcaaataagatctgtg |
45178718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 45172203 - 45172007
Alignment:
| Q |
29 |
tgcatgtttaacgtttggaataaaaatctaactaaactaaagataattacaattatgcagcaatt-----agaagaaaaatatgcagcaaacttttgaa- |
122 |
Q |
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| T |
45172203 |
tgcatgtttgaactttagaataaaaatctcactaaactgaagatacttacaattatgccataattgcaaaagaagaaaaatatgcagcaatttttttaaa |
45172104 |
T |
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| Q |
123 |
gctaatatgcaacgacctggagatgaaaaatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagatagaaaa |
220 |
Q |
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| T |
45172103 |
gctaatatttaacgacctgtagatggaaaag-tcatgcatataaatagtcttaggcagagaacaaaattgtatgttgaaatggactttggataaaaaa |
45172007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 45169351 - 45169233
Alignment:
| Q |
42 |
tttggaataaaaatctaactaaactaaagataattacaattatgcagcaat-----------tagaagaaaaatatgcagcaaacttttgaagctaatat |
130 |
Q |
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|||||| |||||||||||||||| |||| ||||||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||| |
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| T |
45169351 |
tttggagtaaaaatctaactaaaataaatataattacaattacgcagcaatcatatttctgaaagatgaaaaatatgcagcaaa-tttttaagctaatag |
45169253 |
T |
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| Q |
131 |
gcaacgacctggagatgaaa |
150 |
Q |
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| T |
45169252 |
gcaacgacctgaagatgaaa |
45169233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 45168980 - 45168922
Alignment:
| Q |
273 |
caatacaataggtaaagataatgcaagtattagtgcttcataggttgtatcaaataaga |
331 |
Q |
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| T |
45168980 |
caatagaataggtgaagacaatgcaaatattagtgcttcataggttctgtccaataaga |
45168922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 24123723 - 24123768
Alignment:
| Q |
273 |
caatacaataggtaaagataatgcaagtattagtgcttcataggtt |
318 |
Q |
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| T |
24123723 |
caatacaataggtgaagacaatgcaaatattagtgcttcataggtt |
24123768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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