View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21217_low_16 (Length: 291)

Name: NF21217_low_16
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21217_low_16
NF21217_low_16
[»] chr4 (12 HSPs)
chr4 (127-272)||(4025577-4025729)
chr4 (29-73)||(37097811-37097855)
chr4 (29-73)||(52810932-52810976)
chr4 (81-123)||(3987640-3987682)
chr4 (29-67)||(26941841-26941879)
chr4 (29-67)||(33912023-33912061)
chr4 (29-73)||(4026053-4026097)
chr4 (29-73)||(37288949-37288993)
chr4 (29-73)||(46529003-46529047)
chr4 (28-73)||(11290147-11290193)
chr4 (29-73)||(2016512-2016556)
chr4 (37-73)||(21644483-21644519)
[»] chr7 (17 HSPs)
chr7 (29-73)||(39550058-39550102)
chr7 (33-73)||(27729558-27729598)
chr7 (29-73)||(36270550-36270594)
chr7 (29-73)||(34748757-34748802)
chr7 (29-73)||(44314384-44314429)
chr7 (29-73)||(47346174-47346219)
chr7 (29-73)||(19843687-19843731)
chr7 (24-67)||(47346409-47346453)
chr7 (28-66)||(20296242-20296280)
chr7 (29-67)||(22206364-22206402)
chr7 (29-67)||(22228337-22228375)
chr7 (28-73)||(24240470-24240516)
chr7 (28-73)||(37756244-37756290)
chr7 (28-73)||(37761992-37762038)
chr7 (29-73)||(27585235-27585280)
chr7 (29-73)||(36495868-36495913)
chr7 (29-73)||(37756018-37756063)
[»] chr5 (11 HSPs)
chr5 (29-73)||(22196633-22196677)
chr5 (31-73)||(22196406-22196448)
chr5 (29-73)||(33040449-33040494)
chr5 (29-73)||(19439840-19439884)
chr5 (29-73)||(29396423-29396468)
chr5 (29-73)||(33040264-33040309)
chr5 (29-72)||(83891-83935)
chr5 (29-73)||(18541930-18541974)
chr5 (26-73)||(32395394-32395442)
chr5 (28-72)||(84115-84160)
chr5 (29-73)||(2471773-2471817)
[»] chr1 (15 HSPs)
chr1 (29-73)||(45443200-45443244)
chr1 (29-73)||(12287828-12287872)
chr1 (29-73)||(18585018-18585062)
chr1 (28-82)||(29383694-29383748)
chr1 (28-73)||(31411640-31411686)
chr1 (29-73)||(17294846-17294891)
chr1 (29-73)||(17294957-17295002)
chr1 (29-73)||(4187362-4187407)
chr1 (29-73)||(4187593-4187638)
chr1 (29-73)||(29228654-29228699)
chr1 (29-73)||(33562207-33562252)
chr1 (28-73)||(45858634-45858679)
chr1 (29-73)||(51722232-51722277)
chr1 (29-73)||(40521573-40521617)
chr1 (29-73)||(45858859-45858903)
[»] chr3 (15 HSPs)
chr3 (30-73)||(9179114-9179157)
chr3 (29-73)||(48837088-48837132)
chr3 (29-72)||(16051616-16051659)
chr3 (28-73)||(24453757-24453802)
chr3 (32-72)||(16045451-16045491)
chr3 (32-72)||(16060966-16061006)
chr3 (29-73)||(40769992-40770036)
chr3 (28-67)||(10856712-10856751)
chr3 (29-73)||(10450504-10450549)
chr3 (29-73)||(10450728-10450773)
chr3 (29-73)||(15820685-15820730)
chr3 (29-73)||(48511490-48511535)
chr3 (29-73)||(53966212-53966257)
chr3 (29-73)||(9180348-9180392)
chr3 (29-73)||(51734637-51734680)
[»] chr8 (9 HSPs)
chr8 (29-67)||(35908658-35908696)
chr8 (29-73)||(18464049-18464094)
chr8 (29-73)||(9596073-9596117)
chr8 (29-73)||(15711476-15711520)
chr8 (29-73)||(38287817-38287861)
chr8 (29-73)||(20232477-20232522)
chr8 (28-73)||(9596299-9596344)
chr8 (29-73)||(14019787-14019832)
chr8 (189-232)||(5071685-5071729)
[»] scaffold0785 (1 HSPs)
scaffold0785 (29-66)||(2983-3020)
[»] chr2 (14 HSPs)
chr2 (29-73)||(4342338-4342382)
chr2 (29-73)||(4506120-4506164)
chr2 (29-73)||(28193655-28193699)
chr2 (28-67)||(32197181-32197220)
chr2 (29-73)||(10862138-10862182)
chr2 (29-73)||(10862286-10862330)
chr2 (25-73)||(44266388-44266436)
chr2 (29-73)||(11349873-11349918)
chr2 (29-73)||(15961880-15961925)
chr2 (29-73)||(15962237-15962282)
chr2 (28-73)||(17326111-17326156)
chr2 (29-73)||(39420676-39420721)
chr2 (29-73)||(32196890-32196934)
chr2 (29-73)||(33532816-33532860)
[»] chr6 (4 HSPs)
chr6 (29-73)||(26842699-26842744)
chr6 (29-73)||(33396286-33396331)
chr6 (29-73)||(13673835-13673879)
chr6 (29-73)||(23591510-23591553)
[»] scaffold0012 (1 HSPs)
scaffold0012 (29-73)||(165764-165808)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 4025577 - 4025729
Alignment:
Q  127 aaagataaaggcctacgaagcactaacattgaaacagacattgaacacgacactgaca--------ctgataataacttaagataata-aagtgattaaa 217  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||| ||||| ||||        ||||| ||||||||||| |||| |||||||||||    
T  4025577 aaagataaaggcctacgaagcactaacatagacacaaacattgaacatgacaccgacacatagaccctgatgataacttaagaaaatagaagtgattaaa 4025676  T
Q  218 tgtaatcatatgtgtattttcgtgtagatgttggaccttgatacgtatcggacac 272  Q
    ||||| |  |||||| |||| |||||||||| |||| |||| |||||||||||||    
T  4025677 tgtaacc--atgtgtctttttgtgtagatgtaggacgttgacacgtatcggacac 4025729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 37097855 - 37097811
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  37097855 tgttagcgaccaacactcggtgggatttagtcccacatcagatag 37097811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 52810976 - 52810932
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  52810976 tgttagcggccaacactcggtgggatttagtcccacatcggatag 52810932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 3987640 - 3987682
Alignment:
Q  81 accaatccctcgagatattcagattcatattaatcccggctca 123  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  3987640 accaatccttcgagatattcagattcatattaatcccggctca 3987682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 26941841 - 26941879
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatc 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26941841 tgttagcggccaacactcggtgggatttagtcccacatc 26941879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 33912023 - 33912061
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatc 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33912023 tgttagcggccaacactcggtgggatttagtcccacatc 33912061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 4026053 - 4026097
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||    
T  4026053 tgttggcggccaacactcagtgggatttagtcccacatcggatag 4026097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 37288993 - 37288949
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  37288993 tgttagctgccaacaatcggtgggatttagtcccacatcggatag 37288949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 46529047 - 46529003
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||    
T  46529047 tgttagcagccaacactcggtgggatttagtctcacatcggatag 46529003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 11290147 - 11290193
Alignment:
Q  28 atgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  11290147 atgttagcggccaactctcgggtgggatttagtcccacatcggatag 11290193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 2016512 - 2016556
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||| ||||||||||||  ||||||||||| ||||||||||||    
T  2016512 tgttagtggccaacactcgaggggatttagtctcacatcagatag 2016556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 21644483 - 21644519
Alignment:
Q  37 gccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  21644483 gccaacagtcggtgggatttaatcccacatcagatag 21644519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 39550102 - 39550058
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  39550102 tgttagcggccaacactcggtgggatttagtcccacatcggatag 39550058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 27729598 - 27729558
Alignment:
Q  33 agcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  27729598 agcggccaacactcggtgggatttagtcccacatcggatag 27729558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 36270594 - 36270550
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||    
T  36270594 tgttagcggtcaacactcggtgggatttagtcccacatcggatag 36270550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 34748757 - 34748802
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  34748757 tgttagcggccaacactcgggtgggatttagtcccacatcggatag 34748802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 44314429 - 44314384
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  44314429 tgttagcggccaacactcgggtgggatttagtcccacatcggatag 44314384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 47346219 - 47346174
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  47346219 tgttagcggccaactctcgggtgggatttagtcccacatcagatag 47346174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 19843687 - 19843731
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  |||||||||||||| |||||||||    
T  19843687 tgttagcggccaacactcgaagggatttagtcccaaatcagatag 19843731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 47346453 - 47346409
Alignment:
Q  24 aaaaatgttagcggccaacactcgg-tgggatttagtcccacatc 67  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  47346453 aaaaatgttagcggccaactctcgggtgggatttagtcccacatc 47346409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 20296242 - 20296280
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacat 66  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  20296242 atgttagcggccaacactcgaggggatttagtcccacat 20296280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 22206402 - 22206364
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatc 67  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  22206402 tgttagcggcaatcactcggtgggatttagtcccacatc 22206364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 22228337 - 22228375
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatc 67  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  22228337 tgttagcggcaatcactcggtgggatttagtcccacatc 22228375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 24240516 - 24240470
Alignment:
Q  28 atgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  24240516 atgttagcggccaactctcgggtgggatttagtcccacatcggatag 24240470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 37756290 - 37756244
Alignment:
Q  28 atgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  37756290 atgttagcggccaactctcgggtgggatttagtcccacatcggatag 37756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 37762038 - 37761992
Alignment:
Q  28 atgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  37762038 atgttagcggccaactctcgggtgggatttagtcccacatcggatag 37761992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 27585235 - 27585280
Alignment:
Q  29 tgttagcggccaacactc-ggtgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||    
T  27585235 tgttagcagccaacactcaggtgggatttagtcccacatcggatag 27585280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 36495868 - 36495913
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  36495868 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 36495913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 37756063 - 37756018
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  37756063 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 37756018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 22196677 - 22196633
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  22196677 tgttagcggccaacactcggtgggatttagtcccacatcggatag 22196633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 22196448 - 22196406
Alignment:
Q  31 ttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  22196448 ttagcggccaacactcggtgggatttagtcccacatcggatag 22196406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 33040449 - 33040494
Alignment:
Q  29 tgttagcggccaacactcg-gtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33040449 tgttagcggccaacactcgcgtgggatttagtcccacatcagatag 33040494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 19439840 - 19439884
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  19439840 tgttagcggccaacactcgaggggatttagtcccacatcagatag 19439884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 29396468 - 29396423
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  29396468 tgttagcggccaactctcgggtgggatttagtcccacatcagatag 29396423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 33040264 - 33040309
Alignment:
Q  29 tgttagcggccaacactcg-gtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  33040264 tgttagcggccaacactcgcgtgggatttagtcccacatcggatag 33040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 83935 - 83891
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagata 72  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  83935 tgttagcggccaacactcgggtgggatttagtcccacatcggata 83891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 18541930 - 18541974
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||    
T  18541930 tgttagcggccaacacttggtgggatttagtctcacatcggatag 18541974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 32395442 - 32395394
Alignment:
Q  26 aaatgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  32395442 aaatgttagcggccaactctcgggtgggatttagtcccacatcggatag 32395394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 84160 - 84115
Alignment:
Q  28 atgttagcggccaacactcgg-tgggatttagtcccacatcagata 72  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  84160 atgttagtggccaacactcgggtgggatttagtcccacatcggata 84115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 2471817 - 2471773
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||  |||||||||||||||||| |||||    
T  2471817 tgttagcagccaacactcgaggggatttagtcccacatcggatag 2471773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 45443200 - 45443244
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  45443200 tgttagcggccaacactcggtgggatttagtcccacatcggatag 45443244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 12287828 - 12287872
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  12287828 tgttagtggccaacactcggtgggatttagtcccacatcggatag 12287872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 18585018 - 18585062
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  18585018 tgttagcagccaacactcggtgggatttagtcccacatcggatag 18585062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 29383748 - 29383694
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacatcagatagctcagatac 82  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||| | ||||||    
T  29383748 atgttagcggccaacactcgggtggatttagtcccacatcggatagataagatac 29383694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 31411686 - 31411640
Alignment:
Q  28 atgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  31411686 atgttagtggccaacactcgggtgggatttagtcccacatcagatag 31411640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 17294846 - 17294891
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  17294846 tgttagcggccaacactcgggtgggatttagtcccacatcggatag 17294891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 17294957 - 17295002
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  17294957 tgttagcggccaacactcgggtgggatttagtcccacatcggatag 17295002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 4187407 - 4187362
Alignment:
Q  29 tgttagcggccaacactcg-gtgggatttagtcccacatcagatag 73  Q
    |||||||||||||| |||| |||||||||||||||||||| |||||    
T  4187407 tgttagcggccaactctcgagtgggatttagtcccacatcggatag 4187362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 4187638 - 4187593
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  4187638 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 4187593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 29228654 - 29228699
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  29228654 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 29228699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 33562252 - 33562207
Alignment:
Q  29 tgttagcggccaacactc-ggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||    
T  33562252 tgttagcggccaacactcgggtgggttttagtcccacatcggatag 33562207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 45858634 - 45858679
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||   |||||||||||||||||| |||||    
T  45858634 atgttagcggccaacactcatggggatttagtcccacatcggatag 45858679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 51722232 - 51722277
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||    
T  51722232 tgttagcagccaacactcgggtgggatttagtcccacatcggatag 51722277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 40521617 - 40521573
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  | |||||||||||||||| |||||    
T  40521617 tgttagcggccaacactcgaggtgatttagtcccacatcggatag 40521573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 45858859 - 45858903
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||    
T  45858859 tgttagcggccaacactcgaggggatttagtctcacatcggatag 45858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 9179114 - 9179157
Alignment:
Q  30 gttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  9179114 gttagcggccaacactcggtgggatttagtcccacatcggatag 9179157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 48837132 - 48837088
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  48837132 tgttagctgccaacactcggtgggatttagtcccacatcggatag 48837088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 16051659 - 16051616
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagata 72  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  16051659 tgttagcggccaacactcaatgggatttagtcccacatcagata 16051616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 24453757 - 24453802
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||  |||||||||||||||||| |||||    
T  24453757 atgttagcggccaacactcgaggggatttagtcccacatcggatag 24453802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 16045491 - 16045451
Alignment:
Q  32 tagcggccaacactcggtgggatttagtcccacatcagata 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  16045491 tagcggccaacactcgatgggatttagtcccacatcggata 16045451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 16061006 - 16060966
Alignment:
Q  32 tagcggccaacactcggtgggatttagtcccacatcagata 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  16061006 tagcggccaacactcgatgggatttagtcccacatcggata 16060966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 40770036 - 40769992
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  |||||||||||||||||| |||||    
T  40770036 tgttagcggccaacactcgaggggatttagtcccacatcggatag 40769992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 10856751 - 10856712
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacatc 67  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  10856751 atgttagcggccaatacttggtgggatttagtcccacatc 10856712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 10450549 - 10450504
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||    
T  10450549 tgttagcagccaacactcgggtgggatttagtcccacatcggatag 10450504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 10450773 - 10450728
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||    
T  10450773 tgttagcagccaacactcgggtgggatttagtcccacatcggatag 10450728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 15820730 - 15820685
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||    
T  15820730 tgttagcagccaacactcgggtgggatttagtcccacatcggatag 15820685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 48511535 - 48511490
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  48511535 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 48511490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 53966212 - 53966257
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  53966212 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 53966257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 9180348 - 9180392
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||| |||| | ||||||||||||||||| |||||    
T  9180348 tgttagcggccaaccctcgatcggatttagtcccacatcggatag 9180392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 51734680 - 51734637
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||    
T  51734680 tgttagcagccaacactcggtgg-atttagtcccacatcggatag 51734637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 35908658 - 35908696
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatc 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35908658 tgttagcggccaacactcggtgggatttagtcccacatc 35908696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 18464049 - 18464094
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  18464049 tgttagcggccaacactcgggtgggatttagtcccacatcagatag 18464094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 9596117 - 9596073
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||    
T  9596117 tgttagcggccaacactcggtgggatttagttccacatcggatag 9596073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 15711476 - 15711520
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  15711476 tgttagcagccaacactcggtgggatttagtcccacatcggatag 15711520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 38287861 - 38287817
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  38287861 tgttaggggccaacactcggtgggatttagtcccacatcggatag 38287817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 20232522 - 20232477
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  20232522 tgttagcggccaacactcgggtgggatttagtcccacatcggatag 20232477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 9596344 - 9596299
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||||||||||||||| || ||| |||||    
T  9596344 atgttagtggccaacactcggtgggatttagtctcatatcggatag 9596299  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 14019787 - 14019832
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||    
T  14019787 tgttagcagccaacactcgggtgggatttagtcccacatcggatag 14019832  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 5071685 - 5071729
Alignment:
Q  189 taataacttaagataata-aagtgattaaatgtaatcatatgtgt 232  Q
    ||||||||||||| |||| |||||||| |||||||||||||||||    
T  5071685 taataacttaagaaaatacaagtgattgaatgtaatcatatgtgt 5071729  T

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Target: scaffold0785 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 3020 - 2983
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacat 66  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3020 tgttagcggccaacactcggtgggatttagtcccacat 2983  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 4342382 - 4342338
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||| |||||||||||||||||||| |||||    
T  4342382 tgttagcggccaacactcagtgggatttagtcccacatcggatag 4342338  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 4506164 - 4506120
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  4506164 tgttagctgccaacactcggtgggatttagtcccacatcggatag 4506120  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 28193699 - 28193655
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  28193699 tgttagcggccaacactcgaggggatttagtcccacatcagatag 28193655  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 32197181 - 32197220
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacatc 67  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  32197181 atgttagcggccaacactcgatgggatttagtcccacatc 32197220  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 10862182 - 10862138
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  |||||||||||||||||| |||||    
T  10862182 tgttagcggccaacactcgaggggatttagtcccacatcggatag 10862138  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 10862286 - 10862330
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  |||||||||||||||||| |||||    
T  10862286 tgttagcggccaacactcgaggggatttagtcccacatcggatag 10862330  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 44266436 - 44266388
Alignment:
Q  25 aaaatgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||| |||||||| |||  ||||||||||||||||||||||||    
T  44266436 aaaatgttagtggccaacattcgaggggatttagtcccacatcagatag 44266388  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 11349918 - 11349873
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||    
T  11349918 tgttagcagccaacactcgggtgggatttagtcccacatcggatag 11349873  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 15961925 - 15961880
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  15961925 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 15961880  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 15962282 - 15962237
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  15962282 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 15962237  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 17326156 - 17326111
Alignment:
Q  28 atgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||||  ||| |||||||||||||||| |||||    
T  17326156 atgttagcggccaacacttagtgagatttagtcccacatctgatag 17326111  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 39420676 - 39420721
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  39420676 tgttagcggccaactctcgggtgggatttagtcccacatcggatag 39420721  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 32196890 - 32196934
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||||| ||||||||||||| |||||||| |||||| |||||    
T  32196890 tgttagcggtcaacactcggtggaatttagtctcacatcggatag 32196934  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 33532860 - 33532816
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||| ||||||||||||  |||||||||||||||||| |||||    
T  33532860 tgttagtggccaacactcgaggggatttagtcccacatcggatag 33532816  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 26842699 - 26842744
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||    
T  26842699 tgttagcagccaacactcgggtgggatttagtcccacatcggatag 26842744  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 33396286 - 33396331
Alignment:
Q  29 tgttagcggccaacactcgg-tgggatttagtcccacatcagatag 73  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||    
T  33396286 tgttagcggccaacactagggtgggatttagtcccacatcggatag 33396331  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 13673835 - 13673879
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||| |||| ||||| || ||||||||||||    
T  13673835 tgttagcggccaacactcagtggaatttaatctcacatcagatag 13673879  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 23591510 - 23591553
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||    
T  23591510 tgttagcagccaacactcggt-ggatttaatcccacatcagatag 23591553  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 165764 - 165808
Alignment:
Q  29 tgttagcggccaacactcggtgggatttagtcccacatcagatag 73  Q
    |||||||||||||||||||  |||||||||||| ||||| |||||    
T  165764 tgttagcggccaacactcgaggggatttagtcctacatcggatag 165808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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