View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_low_19 (Length: 264)
Name: NF21217_low_19
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 11821479 - 11821303
Alignment:
| Q |
19 |
gcctatacttttacttctcctcatttgctccattttacactcccatcactcaccaaccttcactttctatttcccctcatttaacaaaaggtaaattaac |
118 |
Q |
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| T |
11821479 |
gcctatacttttacttctcctcatttgctccattttacactcccatcactcaccaaccttcactttctatttcccctcatttaacaaaaggtaaattaac |
11821380 |
T |
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| Q |
119 |
tagcaatgtaactttgctagtgtatagtgaattccatcttctatgtttatatcataggttttaaatatttgaaattata |
197 |
Q |
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| T |
11821379 |
tagcaatgtaactttgctagtgtatagtgaattccatcttctatgtt--tatcataggttttaaatatttgaaattata |
11821303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 11821274 - 11821231
Alignment:
| Q |
218 |
atgtgtattataataattgttagtgttagaattttatcgatatt |
261 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
11821274 |
atgtatattataataattgttagtgttagaatttgatcgatatt |
11821231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 11819599 - 11819562
Alignment:
| Q |
224 |
attataataattgttagtgttagaattttatcgatatt |
261 |
Q |
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| T |
11819599 |
attataaaaattgttagtgttagaatttgatcgatatt |
11819562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 44249739 - 44249578
Alignment:
| Q |
21 |
ctatacttttacttctcctcatttgctccattttacactcccatcactcaccaaccttcactttctatttcccctcatttaacaaaaggtaaattaacta |
120 |
Q |
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| T |
44249739 |
ctatacttttacttccactcatttgctccaattttcacttccatcactcaccaatcttcactttttgcttcccctcctttgagaaaaggtaaactcacta |
44249640 |
T |
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| Q |
121 |
gcaatgtaactttgctagtgtatagtgaattccatcttctatgtttatatcataggttttaa |
182 |
Q |
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|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |
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| T |
44249639 |
gcaatgtacctttgctagtgtctagtgaaatccatcttctatgtttatatcatagattttaa |
44249578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 44253349 - 44253188
Alignment:
| Q |
21 |
ctatacttttacttctcctcatttgctccattttacactcccatcactcaccaaccttcactttctatttcccctcatttaacaaaaggtaaattaacta |
120 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||| | |||||||||||| | || |
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| T |
44253349 |
ctatacttttacttccactcatttgctccatttttcactcccatcactcaccaatcttcactttctgcttcccctcctttgagaaaaggtaaattcatta |
44253250 |
T |
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| Q |
121 |
gcaatgtaactttgctagtgtatagtgaattccatcttctatgtttatatcataggttttaa |
182 |
Q |
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| ||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
44253249 |
gtaatgtgcctttgctagtgtccagtgaatttcatcatctatgtttatatcataggttttaa |
44253188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 15273679 - 15273821
Alignment:
| Q |
19 |
gcctatacttttacttctcctcatttgctccattttacactcccatca---ctcaccaaccttcactttctatttcccctcatttaacaaaaggtaaatt |
115 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||| | ||||||| || | |
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| T |
15273679 |
gcctatacttttacttccactcatttgctccatttttcactcccatcatccctcaccaatcttcactttcttcttcccctcctttgagaaaaggtgaact |
15273778 |
T |
|
| Q |
116 |
aactagcaatgtaactttgctagtgtatagtgaattccatctt |
158 |
Q |
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||||||| |||| |||||||||||| | ||||||||||||| |
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| T |
15273779 |
cactagcactgtacctttgctagtgtccattgaattccatctt |
15273821 |
T |
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