View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21217_low_2 (Length: 696)
Name: NF21217_low_2
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 82 - 675
Target Start/End: Complemental strand, 45667047 - 45666452
Alignment:
| Q |
82 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccatgccgtgttttcttgcgataaacac |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45667047 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccacgccgtgttttcttgcgataaacac |
45666948 |
T |
|
| Q |
182 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttttacagcaaaaaagggaaagtagcttgacc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45666947 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttttacagcaaaaaagggaaagtagcttgacc |
45666848 |
T |
|
| Q |
282 |
aacacatgatgacagttagaaatcctaaaactttaattatttctaaatattttcagttaattatatatgccatggcatatatgtatgttgcaaaaaatgg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
45666847 |
aacacatgatgacagttagaaatcctaaaactttaattatttctaaatattttcagttaattatatatgccatggcatatatgcatgttac-aaaaatgg |
45666749 |
T |
|
| Q |
382 |
gaatcagccaacaaattcacnnnnnnntgctattgaagt---acgaaaagaaaagaaagactcgtcaaccttaatactattatttggtgtagaaatacct |
478 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45666748 |
gaatcagccaaaaaattcacaaaaaaatgctattaaagtacgacgaaaagaaaagaaagactcgtcaaccttaatactattatttggtgtagaaatacct |
45666649 |
T |
|
| Q |
479 |
ctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaac-aaaaaat |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45666648 |
ctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaaaaaaat |
45666549 |
T |
|
| Q |
578 |
atttaatgttagagaggaaaggaggagaaaggtgctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcattgtg |
675 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45666548 |
atttaatgtt-gagaggaaaggaggagaaaggtgctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcattgtg |
45666452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 573
Target Start/End: Original strand, 37973690 - 37973790
Alignment:
| Q |
473 |
atacctctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaa |
572 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| || ||||| ||||| | | ||||| ||| |||| ||||||||||||||||| ||||| | |||||| |
|
|
| T |
37973690 |
atacctctaaattaacaagccagctgtttgcaccggatccgtatccgtgatcaaaatgataagcaggcaatgttccatccaagcagactgccaaaaacaa |
37973789 |
T |
|
| Q |
573 |
a |
573 |
Q |
| |
|
| |
|
|
| T |
37973790 |
a |
37973790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 38257829 - 38257767
Alignment:
| Q |
82 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtat |
144 |
Q |
| |
|
||||| ||||||||||||||||| || | |||||||||||||||||| | |||||||||||| |
|
|
| T |
38257829 |
cctgggttttcttcaggtttattgctcaatattcctgtgaatggtatttgattttccatgtat |
38257767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University