View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21217_low_20 (Length: 260)

Name: NF21217_low_20
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21217_low_20
NF21217_low_20
[»] chr1 (3 HSPs)
chr1 (13-222)||(27215950-27216159)
chr1 (19-151)||(27222003-27222127)
chr1 (133-222)||(27221871-27221960)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 27216159 - 27215950
Alignment:
Q  13 gagaagaaaaagcaactaatttatatagtattcggaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttataaaaaataa 112  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27216159 gagaagaaaaagcaactaatttatatagtattcgtaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttagaaaaaataa 27216060  T
Q  113 atattaggtttttaaagttaattttatagggtagaatatgatgatgttgaatgattgatgcacataaaattataagaaaatcatcaaacaacctcaatat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  27216059 atattaggtttttaaagttaattttatagggtagaatatgatgatgttgaatgattgctacacataaaattataagaaaatcatcaaacaacctcaatat 27215960  T
Q  213 caacttcaga 222  Q
    ||||||||||    
T  27215959 caacttcaga 27215950  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 27222127 - 27222003
Alignment:
Q  19 aaaaagcaactaatttatatagtattcggaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttataaaaaataaatatta 118  Q
    ||||| ||| |||| ||||||||||||| ||||||||    ||| || |||||||||||||||||||||| ||||||||||||||||||   ||||||||    
T  27222127 aaaaaacaagtaatatatatagtattcgtaaaataaa----aaaata-tttatatagtaatatattagtaatacaaagatcttataaaa---aaatatta 27222036  T
Q  119 ggtttttaaagttaattttatagggtagaatat 151  Q
    |||||||||||||||||||| || ||| |||||    
T  27222035 ggtttttaaagttaattttacagtgtacaatat 27222003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 27221960 - 27221871
Alignment:
Q  133 attttatagggtagaatatgatgatgttgaatgattgatgcacataaaattataagaaaatcatcaaacaacctcaatatcaacttcaga 222  Q
    ||||||||| ||| ||| |||||||||||||||||  || |||||||||||||||||||||| || || ||| |||||||||||||||||    
T  27221960 attttatagtgtacaatgtgatgatgttgaatgatctatacacataaaattataagaaaatcctctaaaaacatcaatatcaacttcaga 27221871  T

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